Experiment: Melibiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS11330 and ABZR88_RS11335 are separated by 54 nucleotides ABZR88_RS11335 and ABZR88_RS11340 are separated by 101 nucleotides
ABZR88_RS11330: ABZR88_RS11330 - TonB-dependent receptor, at 2,786,566 to 2,788,734
_RS11330
ABZR88_RS11335: ABZR88_RS11335 - hypothetical protein, at 2,788,789 to 2,789,184
_RS11335
ABZR88_RS11340: ABZR88_RS11340 - MFS transporter, at 2,789,286 to 2,790,500
_RS11340
Position (kb)
2788
2789
2790 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2787.844 kb on - strand, within ABZR88_RS11330 at 2787.909 kb on + strand, within ABZR88_RS11330 at 2788.102 kb on - strand, within ABZR88_RS11330 at 2788.239 kb on + strand, within ABZR88_RS11330 at 2788.321 kb on - strand, within ABZR88_RS11330 at 2788.359 kb on + strand, within ABZR88_RS11330 at 2788.369 kb on + strand, within ABZR88_RS11330 at 2788.453 kb on + strand, within ABZR88_RS11330 at 2788.509 kb on - strand, within ABZR88_RS11330 at 2788.509 kb on - strand, within ABZR88_RS11330 at 2788.522 kb on - strand at 2788.641 kb on + strand at 2788.642 kb on - strand at 2788.762 kb on + strand at 2788.815 kb on + strand at 2789.131 kb on - strand, within ABZR88_RS11335 at 2789.229 kb on - strand at 2789.242 kb on - strand at 2789.242 kb on - strand at 2789.254 kb on + strand at 2789.274 kb on - strand at 2789.274 kb on - strand at 2789.274 kb on - strand at 2789.300 kb on + strand at 2789.371 kb on + strand at 2789.404 kb on - strand at 2789.529 kb on - strand, within ABZR88_RS11340 at 2789.579 kb on - strand, within ABZR88_RS11340 at 2789.671 kb on - strand, within ABZR88_RS11340 at 2789.765 kb on - strand, within ABZR88_RS11340 at 2789.767 kb on + strand, within ABZR88_RS11340 at 2789.767 kb on + strand, within ABZR88_RS11340 at 2789.788 kb on + strand, within ABZR88_RS11340 at 2789.795 kb on - strand, within ABZR88_RS11340 at 2789.905 kb on - strand, within ABZR88_RS11340 at 2789.946 kb on - strand, within ABZR88_RS11340 at 2789.983 kb on + strand, within ABZR88_RS11340 at 2790.147 kb on - strand, within ABZR88_RS11340 at 2790.151 kb on - strand, within ABZR88_RS11340
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C); 6 days remove 2,787,844 - ABZR88_RS11330 0.59 -0.3 2,787,909 + ABZR88_RS11330 0.62 +0.5 2,788,102 - ABZR88_RS11330 0.71 +0.0 2,788,239 + ABZR88_RS11330 0.77 +0.9 2,788,321 - ABZR88_RS11330 0.81 -0.2 2,788,359 + ABZR88_RS11330 0.83 -1.1 2,788,369 + ABZR88_RS11330 0.83 -0.3 2,788,453 + ABZR88_RS11330 0.87 -0.3 2,788,509 - ABZR88_RS11330 0.90 +2.5 2,788,509 - ABZR88_RS11330 0.90 +0.2 2,788,522 - -0.9 2,788,641 + +0.9 2,788,642 - +0.5 2,788,762 + -0.4 2,788,815 + +0.4 2,789,131 - ABZR88_RS11335 0.86 -1.2 2,789,229 - +0.2 2,789,242 - +3.0 2,789,242 - +0.2 2,789,254 + +1.0 2,789,274 - +0.3 2,789,274 - -1.7 2,789,274 - -0.2 2,789,300 + -0.3 2,789,371 + +0.3 2,789,404 - -0.8 2,789,529 - ABZR88_RS11340 0.20 +0.6 2,789,579 - ABZR88_RS11340 0.24 -0.6 2,789,671 - ABZR88_RS11340 0.32 +0.7 2,789,765 - ABZR88_RS11340 0.39 -0.1 2,789,767 + ABZR88_RS11340 0.40 -0.2 2,789,767 + ABZR88_RS11340 0.40 -1.4 2,789,788 + ABZR88_RS11340 0.41 +0.3 2,789,795 - ABZR88_RS11340 0.42 -0.3 2,789,905 - ABZR88_RS11340 0.51 +0.7 2,789,946 - ABZR88_RS11340 0.54 +0.5 2,789,983 + ABZR88_RS11340 0.57 +0.1 2,790,147 - ABZR88_RS11340 0.71 -0.4 2,790,151 - ABZR88_RS11340 0.71 -0.1
Or see this region's nucleotide sequence