Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS11335

Experiment: Melibiose (C); 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS11330 and ABZR88_RS11335 are separated by 54 nucleotidesABZR88_RS11335 and ABZR88_RS11340 are separated by 101 nucleotides ABZR88_RS11330: ABZR88_RS11330 - TonB-dependent receptor, at 2,786,566 to 2,788,734 _RS11330 ABZR88_RS11335: ABZR88_RS11335 - hypothetical protein, at 2,788,789 to 2,789,184 _RS11335 ABZR88_RS11340: ABZR88_RS11340 - MFS transporter, at 2,789,286 to 2,790,500 _RS11340 Position (kb) 2788 2789 2790Strain fitness (log2 ratio) -1 0 1 2 3at 2787.844 kb on - strand, within ABZR88_RS11330at 2787.909 kb on + strand, within ABZR88_RS11330at 2788.102 kb on - strand, within ABZR88_RS11330at 2788.239 kb on + strand, within ABZR88_RS11330at 2788.321 kb on - strand, within ABZR88_RS11330at 2788.359 kb on + strand, within ABZR88_RS11330at 2788.369 kb on + strand, within ABZR88_RS11330at 2788.453 kb on + strand, within ABZR88_RS11330at 2788.509 kb on - strand, within ABZR88_RS11330at 2788.509 kb on - strand, within ABZR88_RS11330at 2788.522 kb on - strandat 2788.641 kb on + strandat 2788.642 kb on - strandat 2788.762 kb on + strandat 2788.815 kb on + strandat 2789.131 kb on - strand, within ABZR88_RS11335at 2789.229 kb on - strandat 2789.242 kb on - strandat 2789.242 kb on - strandat 2789.254 kb on + strandat 2789.274 kb on - strandat 2789.274 kb on - strandat 2789.274 kb on - strandat 2789.300 kb on + strandat 2789.371 kb on + strandat 2789.404 kb on - strandat 2789.529 kb on - strand, within ABZR88_RS11340at 2789.579 kb on - strand, within ABZR88_RS11340at 2789.671 kb on - strand, within ABZR88_RS11340at 2789.765 kb on - strand, within ABZR88_RS11340at 2789.767 kb on + strand, within ABZR88_RS11340at 2789.767 kb on + strand, within ABZR88_RS11340at 2789.788 kb on + strand, within ABZR88_RS11340at 2789.795 kb on - strand, within ABZR88_RS11340at 2789.905 kb on - strand, within ABZR88_RS11340at 2789.946 kb on - strand, within ABZR88_RS11340at 2789.983 kb on + strand, within ABZR88_RS11340at 2790.147 kb on - strand, within ABZR88_RS11340at 2790.151 kb on - strand, within ABZR88_RS11340

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Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C); 6 days
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2,787,844 - ABZR88_RS11330 0.59 -0.3
2,787,909 + ABZR88_RS11330 0.62 +0.5
2,788,102 - ABZR88_RS11330 0.71 +0.0
2,788,239 + ABZR88_RS11330 0.77 +0.9
2,788,321 - ABZR88_RS11330 0.81 -0.2
2,788,359 + ABZR88_RS11330 0.83 -1.1
2,788,369 + ABZR88_RS11330 0.83 -0.3
2,788,453 + ABZR88_RS11330 0.87 -0.3
2,788,509 - ABZR88_RS11330 0.90 +2.5
2,788,509 - ABZR88_RS11330 0.90 +0.2
2,788,522 - -0.9
2,788,641 + +0.9
2,788,642 - +0.5
2,788,762 + -0.4
2,788,815 + +0.4
2,789,131 - ABZR88_RS11335 0.86 -1.2
2,789,229 - +0.2
2,789,242 - +3.0
2,789,242 - +0.2
2,789,254 + +1.0
2,789,274 - +0.3
2,789,274 - -1.7
2,789,274 - -0.2
2,789,300 + -0.3
2,789,371 + +0.3
2,789,404 - -0.8
2,789,529 - ABZR88_RS11340 0.20 +0.6
2,789,579 - ABZR88_RS11340 0.24 -0.6
2,789,671 - ABZR88_RS11340 0.32 +0.7
2,789,765 - ABZR88_RS11340 0.39 -0.1
2,789,767 + ABZR88_RS11340 0.40 -0.2
2,789,767 + ABZR88_RS11340 0.40 -1.4
2,789,788 + ABZR88_RS11340 0.41 +0.3
2,789,795 - ABZR88_RS11340 0.42 -0.3
2,789,905 - ABZR88_RS11340 0.51 +0.7
2,789,946 - ABZR88_RS11340 0.54 +0.5
2,789,983 + ABZR88_RS11340 0.57 +0.1
2,790,147 - ABZR88_RS11340 0.71 -0.4
2,790,151 - ABZR88_RS11340 0.71 -0.1

Or see this region's nucleotide sequence