Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS10015

Experiment: Melibiose (C); 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS10005 and ABZR88_RS10015 are separated by 692 nucleotidesABZR88_RS10015 and ABZR88_RS10020 are separated by 77 nucleotides ABZR88_RS10005: ABZR88_RS10005 - isoprenylcysteine carboxyl methyltransferase family protein, at 2,477,025 to 2,477,546 _RS10005 ABZR88_RS10015: ABZR88_RS10015 - sigma-54 dependent transcriptional regulator, at 2,478,239 to 2,479,627 _RS10015 ABZR88_RS10020: ABZR88_RS10020 - hypothetical protein, at 2,479,705 to 2,480,529 _RS10020 Position (kb) 2478 2479 2480Strain fitness (log2 ratio) -3 -2 -1 0 1at 2477.400 kb on - strand, within ABZR88_RS10005at 2477.403 kb on + strand, within ABZR88_RS10005at 2477.659 kb on - strandat 2477.669 kb on + strandat 2477.676 kb on - strandat 2478.237 kb on + strandat 2478.695 kb on - strand, within ABZR88_RS10015at 2479.056 kb on + strand, within ABZR88_RS10015at 2479.099 kb on - strand, within ABZR88_RS10015at 2479.412 kb on - strand, within ABZR88_RS10015at 2479.589 kb on - strandat 2479.592 kb on - strandat 2479.784 kb on + strandat 2479.790 kb on + strand, within ABZR88_RS10020at 2479.811 kb on + strand, within ABZR88_RS10020at 2479.811 kb on + strand, within ABZR88_RS10020at 2479.868 kb on - strand, within ABZR88_RS10020at 2479.870 kb on - strand, within ABZR88_RS10020at 2479.879 kb on - strand, within ABZR88_RS10020at 2479.922 kb on + strand, within ABZR88_RS10020at 2479.938 kb on - strand, within ABZR88_RS10020at 2480.033 kb on + strand, within ABZR88_RS10020at 2480.100 kb on + strand, within ABZR88_RS10020at 2480.134 kb on - strand, within ABZR88_RS10020at 2480.300 kb on - strand, within ABZR88_RS10020at 2480.342 kb on + strand, within ABZR88_RS10020at 2480.361 kb on + strand, within ABZR88_RS10020

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Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C); 6 days
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2,477,400 - ABZR88_RS10005 0.72 +1.1
2,477,403 + ABZR88_RS10005 0.72 -0.2
2,477,659 - -0.2
2,477,669 + -0.3
2,477,676 - -0.0
2,478,237 + -1.0
2,478,695 - ABZR88_RS10015 0.33 +0.6
2,479,056 + ABZR88_RS10015 0.59 -0.3
2,479,099 - ABZR88_RS10015 0.62 -0.4
2,479,412 - ABZR88_RS10015 0.84 -0.2
2,479,589 - -2.8
2,479,592 - -0.6
2,479,784 + +0.9
2,479,790 + ABZR88_RS10020 0.10 +0.2
2,479,811 + ABZR88_RS10020 0.13 +0.2
2,479,811 + ABZR88_RS10020 0.13 -0.1
2,479,868 - ABZR88_RS10020 0.20 -0.1
2,479,870 - ABZR88_RS10020 0.20 +0.2
2,479,879 - ABZR88_RS10020 0.21 -2.1
2,479,922 + ABZR88_RS10020 0.26 -1.0
2,479,938 - ABZR88_RS10020 0.28 -0.2
2,480,033 + ABZR88_RS10020 0.40 +0.1
2,480,100 + ABZR88_RS10020 0.48 -0.4
2,480,134 - ABZR88_RS10020 0.52 -0.1
2,480,300 - ABZR88_RS10020 0.72 +1.6
2,480,342 + ABZR88_RS10020 0.77 +0.3
2,480,361 + ABZR88_RS10020 0.80 -0.4

Or see this region's nucleotide sequence