Experiment: Melibiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS10005 and ABZR88_RS10015 are separated by 692 nucleotides ABZR88_RS10015 and ABZR88_RS10020 are separated by 77 nucleotides
ABZR88_RS10005: ABZR88_RS10005 - isoprenylcysteine carboxyl methyltransferase family protein, at 2,477,025 to 2,477,546
_RS10005
ABZR88_RS10015: ABZR88_RS10015 - sigma-54 dependent transcriptional regulator, at 2,478,239 to 2,479,627
_RS10015
ABZR88_RS10020: ABZR88_RS10020 - hypothetical protein, at 2,479,705 to 2,480,529
_RS10020
Position (kb)
2478
2479
2480 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2477.400 kb on - strand, within ABZR88_RS10005 at 2477.403 kb on + strand, within ABZR88_RS10005 at 2477.659 kb on - strand at 2477.669 kb on + strand at 2477.676 kb on - strand at 2478.237 kb on + strand at 2478.695 kb on - strand, within ABZR88_RS10015 at 2479.056 kb on + strand, within ABZR88_RS10015 at 2479.099 kb on - strand, within ABZR88_RS10015 at 2479.412 kb on - strand, within ABZR88_RS10015 at 2479.589 kb on - strand at 2479.592 kb on - strand at 2479.784 kb on + strand at 2479.790 kb on + strand, within ABZR88_RS10020 at 2479.811 kb on + strand, within ABZR88_RS10020 at 2479.811 kb on + strand, within ABZR88_RS10020 at 2479.868 kb on - strand, within ABZR88_RS10020 at 2479.870 kb on - strand, within ABZR88_RS10020 at 2479.879 kb on - strand, within ABZR88_RS10020 at 2479.922 kb on + strand, within ABZR88_RS10020 at 2479.938 kb on - strand, within ABZR88_RS10020 at 2480.033 kb on + strand, within ABZR88_RS10020 at 2480.100 kb on + strand, within ABZR88_RS10020 at 2480.134 kb on - strand, within ABZR88_RS10020 at 2480.300 kb on - strand, within ABZR88_RS10020 at 2480.342 kb on + strand, within ABZR88_RS10020 at 2480.361 kb on + strand, within ABZR88_RS10020
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C); 6 days remove 2,477,400 - ABZR88_RS10005 0.72 +1.1 2,477,403 + ABZR88_RS10005 0.72 -0.2 2,477,659 - -0.2 2,477,669 + -0.3 2,477,676 - -0.0 2,478,237 + -1.0 2,478,695 - ABZR88_RS10015 0.33 +0.6 2,479,056 + ABZR88_RS10015 0.59 -0.3 2,479,099 - ABZR88_RS10015 0.62 -0.4 2,479,412 - ABZR88_RS10015 0.84 -0.2 2,479,589 - -2.8 2,479,592 - -0.6 2,479,784 + +0.9 2,479,790 + ABZR88_RS10020 0.10 +0.2 2,479,811 + ABZR88_RS10020 0.13 +0.2 2,479,811 + ABZR88_RS10020 0.13 -0.1 2,479,868 - ABZR88_RS10020 0.20 -0.1 2,479,870 - ABZR88_RS10020 0.20 +0.2 2,479,879 - ABZR88_RS10020 0.21 -2.1 2,479,922 + ABZR88_RS10020 0.26 -1.0 2,479,938 - ABZR88_RS10020 0.28 -0.2 2,480,033 + ABZR88_RS10020 0.40 +0.1 2,480,100 + ABZR88_RS10020 0.48 -0.4 2,480,134 - ABZR88_RS10020 0.52 -0.1 2,480,300 - ABZR88_RS10020 0.72 +1.6 2,480,342 + ABZR88_RS10020 0.77 +0.3 2,480,361 + ABZR88_RS10020 0.80 -0.4
Or see this region's nucleotide sequence