Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06885

Experiment: Melibiose (C); 6 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS06880 and ABZR88_RS06885 are separated by 115 nucleotidesABZR88_RS06885 and ABZR88_RS06890 are separated by 287 nucleotides ABZR88_RS06880: ABZR88_RS06880 - histidinol dehydrogenase, at 1,682,233 to 1,683,516 _RS06880 ABZR88_RS06885: ABZR88_RS06885 - ATP phosphoribosyltransferase, at 1,683,632 to 1,684,483 _RS06885 ABZR88_RS06890: ABZR88_RS06890 - hypothetical protein, at 1,684,771 to 1,686,270 _RS06890 Position (kb) 1683 1684 1685Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1682.913 kb on + strand, within ABZR88_RS06880at 1683.254 kb on + strand, within ABZR88_RS06880at 1683.500 kb on + strandat 1683.582 kb on - strandat 1683.634 kb on - strandat 1683.847 kb on - strand, within ABZR88_RS06885at 1684.624 kb on + strandat 1684.624 kb on + strandat 1684.647 kb on - strandat 1684.732 kb on + strandat 1684.782 kb on + strandat 1684.814 kb on - strandat 1684.972 kb on - strand, within ABZR88_RS06890at 1685.003 kb on + strand, within ABZR88_RS06890at 1685.035 kb on - strand, within ABZR88_RS06890at 1685.151 kb on - strand, within ABZR88_RS06890at 1685.192 kb on - strand, within ABZR88_RS06890at 1685.331 kb on + strand, within ABZR88_RS06890at 1685.435 kb on - strand, within ABZR88_RS06890at 1685.441 kb on - strand, within ABZR88_RS06890at 1685.441 kb on - strand, within ABZR88_RS06890at 1685.462 kb on - strand, within ABZR88_RS06890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C); 6 days
remove
1,682,913 + ABZR88_RS06880 0.53 -0.1
1,683,254 + ABZR88_RS06880 0.80 -0.7
1,683,500 + +0.8
1,683,582 - -0.3
1,683,634 - +0.6
1,683,847 - ABZR88_RS06885 0.25 -1.0
1,684,624 + +4.1
1,684,624 + -2.0
1,684,647 - -0.4
1,684,732 + +0.4
1,684,782 + -0.2
1,684,814 - +0.1
1,684,972 - ABZR88_RS06890 0.13 +1.0
1,685,003 + ABZR88_RS06890 0.15 -0.2
1,685,035 - ABZR88_RS06890 0.18 +0.1
1,685,151 - ABZR88_RS06890 0.25 +0.3
1,685,192 - ABZR88_RS06890 0.28 -0.3
1,685,331 + ABZR88_RS06890 0.37 -1.0
1,685,435 - ABZR88_RS06890 0.44 +0.2
1,685,441 - ABZR88_RS06890 0.45 -0.2
1,685,441 - ABZR88_RS06890 0.45 +0.2
1,685,462 - ABZR88_RS06890 0.46 +4.1

Or see this region's nucleotide sequence