Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06870

Experiment: Melibiose (C); 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06860 and ABZR88_RS06865 are separated by 7 nucleotidesABZR88_RS06865 and ABZR88_RS06870 are separated by 101 nucleotidesABZR88_RS06870 and ABZR88_RS06875 overlap by 4 nucleotides ABZR88_RS06860: ABZR88_RS06860 - HisA/HisF-related TIM barrel protein, at 1,678,453 to 1,679,202 _RS06860 ABZR88_RS06865: ABZR88_RS06865 - imidazole glycerol phosphate synthase subunit HisH, at 1,679,210 to 1,679,800 _RS06865 ABZR88_RS06870: ABZR88_RS06870 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 1,679,902 to 1,681,053 _RS06870 ABZR88_RS06875: ABZR88_RS06875 - histidinol-phosphate transaminase, at 1,681,050 to 1,682,096 _RS06875 Position (kb) 1679 1680 1681 1682Strain fitness (log2 ratio) -1 0 1 2at 1678.906 kb on - strand, within ABZR88_RS06860at 1679.198 kb on + strandat 1679.248 kb on - strandat 1679.368 kb on - strand, within ABZR88_RS06865at 1679.809 kb on - strandat 1679.820 kb on + strandat 1679.884 kb on - strandat 1679.904 kb on - strandat 1680.060 kb on + strand, within ABZR88_RS06870at 1680.243 kb on + strand, within ABZR88_RS06870at 1681.220 kb on + strand, within ABZR88_RS06875at 1681.499 kb on + strand, within ABZR88_RS06875at 1681.752 kb on + strand, within ABZR88_RS06875at 1681.805 kb on + strand, within ABZR88_RS06875

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Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C); 6 days
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1,678,906 - ABZR88_RS06860 0.60 -0.7
1,679,198 + -1.1
1,679,248 - -0.9
1,679,368 - ABZR88_RS06865 0.27 -1.1
1,679,809 - -0.3
1,679,820 + +2.1
1,679,884 - -0.5
1,679,904 - -0.2
1,680,060 + ABZR88_RS06870 0.14 -1.4
1,680,243 + ABZR88_RS06870 0.30 -0.7
1,681,220 + ABZR88_RS06875 0.16 -0.4
1,681,499 + ABZR88_RS06875 0.43 +1.5
1,681,752 + ABZR88_RS06875 0.67 -1.3
1,681,805 + ABZR88_RS06875 0.72 +0.4

Or see this region's nucleotide sequence