Experiment: Melibiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06860 and ABZR88_RS06865 are separated by 7 nucleotides ABZR88_RS06865 and ABZR88_RS06870 are separated by 101 nucleotides ABZR88_RS06870 and ABZR88_RS06875 overlap by 4 nucleotides
ABZR88_RS06860: ABZR88_RS06860 - HisA/HisF-related TIM barrel protein, at 1,678,453 to 1,679,202
_RS06860
ABZR88_RS06865: ABZR88_RS06865 - imidazole glycerol phosphate synthase subunit HisH, at 1,679,210 to 1,679,800
_RS06865
ABZR88_RS06870: ABZR88_RS06870 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 1,679,902 to 1,681,053
_RS06870
ABZR88_RS06875: ABZR88_RS06875 - histidinol-phosphate transaminase, at 1,681,050 to 1,682,096
_RS06875
Position (kb)
1679
1680
1681
1682 Strain fitness (log2 ratio)
-1
0
1
2 at 1678.906 kb on - strand, within ABZR88_RS06860 at 1679.198 kb on + strand at 1679.248 kb on - strand at 1679.368 kb on - strand, within ABZR88_RS06865 at 1679.809 kb on - strand at 1679.820 kb on + strand at 1679.884 kb on - strand at 1679.904 kb on - strand at 1680.060 kb on + strand, within ABZR88_RS06870 at 1680.243 kb on + strand, within ABZR88_RS06870 at 1681.220 kb on + strand, within ABZR88_RS06875 at 1681.499 kb on + strand, within ABZR88_RS06875 at 1681.752 kb on + strand, within ABZR88_RS06875 at 1681.805 kb on + strand, within ABZR88_RS06875
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C); 6 days remove 1,678,906 - ABZR88_RS06860 0.60 -0.7 1,679,198 + -1.1 1,679,248 - -0.9 1,679,368 - ABZR88_RS06865 0.27 -1.1 1,679,809 - -0.3 1,679,820 + +2.1 1,679,884 - -0.5 1,679,904 - -0.2 1,680,060 + ABZR88_RS06870 0.14 -1.4 1,680,243 + ABZR88_RS06870 0.30 -0.7 1,681,220 + ABZR88_RS06875 0.16 -0.4 1,681,499 + ABZR88_RS06875 0.43 +1.5 1,681,752 + ABZR88_RS06875 0.67 -1.3 1,681,805 + ABZR88_RS06875 0.72 +0.4
Or see this region's nucleotide sequence