Experiment: Melibiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS04460 and ABZR88_RS04465 are separated by 408 nucleotides ABZR88_RS04465 and ABZR88_RS04470 are separated by 271 nucleotides ABZR88_RS04470 and ABZR88_RS04475 are separated by 9 nucleotides
ABZR88_RS04460: ABZR88_RS04460 - sialate O-acetylesterase, at 1,066,212 to 1,067,546
_RS04460
ABZR88_RS04465: ABZR88_RS04465 - hypothetical protein, at 1,067,955 to 1,068,329
_RS04465
ABZR88_RS04470: ABZR88_RS04470 - hypothetical protein, at 1,068,601 to 1,068,813
_RS04470
ABZR88_RS04475: ABZR88_RS04475 - DUF5686 and carboxypeptidase regulatory-like domain-containing protein, at 1,068,823 to 1,071,240
_RS04475
Position (kb)
1067
1068
1069 Strain fitness (log2 ratio)
-2
-1
0
1 at 1066.958 kb on - strand, within ABZR88_RS04460 at 1066.966 kb on - strand, within ABZR88_RS04460 at 1067.054 kb on + strand, within ABZR88_RS04460 at 1067.060 kb on + strand, within ABZR88_RS04460 at 1067.100 kb on - strand, within ABZR88_RS04460 at 1067.266 kb on - strand, within ABZR88_RS04460 at 1067.415 kb on + strand at 1067.664 kb on + strand at 1067.665 kb on - strand at 1067.734 kb on - strand at 1067.746 kb on + strand at 1067.799 kb on - strand at 1067.805 kb on + strand at 1067.846 kb on + strand at 1068.044 kb on - strand, within ABZR88_RS04465 at 1068.112 kb on - strand, within ABZR88_RS04465 at 1068.382 kb on - strand at 1068.384 kb on + strand at 1068.568 kb on + strand at 1068.577 kb on - strand at 1068.581 kb on - strand at 1068.605 kb on + strand at 1068.606 kb on - strand at 1068.609 kb on + strand at 1068.674 kb on + strand, within ABZR88_RS04470 at 1068.783 kb on + strand, within ABZR88_RS04470 at 1068.783 kb on + strand, within ABZR88_RS04470 at 1068.784 kb on - strand, within ABZR88_RS04470 at 1068.784 kb on - strand, within ABZR88_RS04470 at 1068.887 kb on + strand at 1068.963 kb on - strand at 1069.061 kb on + strand at 1069.078 kb on - strand, within ABZR88_RS04475 at 1069.078 kb on - strand, within ABZR88_RS04475 at 1069.124 kb on + strand, within ABZR88_RS04475 at 1069.186 kb on - strand, within ABZR88_RS04475 at 1069.305 kb on + strand, within ABZR88_RS04475
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C); 6 days remove 1,066,958 - ABZR88_RS04460 0.56 -0.7 1,066,966 - ABZR88_RS04460 0.56 -0.6 1,067,054 + ABZR88_RS04460 0.63 +0.0 1,067,060 + ABZR88_RS04460 0.64 +1.3 1,067,100 - ABZR88_RS04460 0.67 -0.2 1,067,266 - ABZR88_RS04460 0.79 -0.3 1,067,415 + +1.2 1,067,664 + +0.6 1,067,665 - -0.4 1,067,734 - -0.3 1,067,746 + -0.4 1,067,799 - +0.1 1,067,805 + -0.1 1,067,846 + -0.4 1,068,044 - ABZR88_RS04465 0.24 -0.2 1,068,112 - ABZR88_RS04465 0.42 -2.4 1,068,382 - -0.3 1,068,384 + +0.1 1,068,568 + +1.3 1,068,577 - +0.8 1,068,581 - -0.8 1,068,605 + -0.1 1,068,606 - -0.8 1,068,609 + -0.6 1,068,674 + ABZR88_RS04470 0.34 +0.3 1,068,783 + ABZR88_RS04470 0.85 -0.5 1,068,783 + ABZR88_RS04470 0.85 -1.1 1,068,784 - ABZR88_RS04470 0.86 +0.3 1,068,784 - ABZR88_RS04470 0.86 +0.9 1,068,887 + -0.2 1,068,963 - -1.0 1,069,061 + +0.5 1,069,078 - ABZR88_RS04475 0.11 -1.0 1,069,078 - ABZR88_RS04475 0.11 +0.1 1,069,124 + ABZR88_RS04475 0.12 +0.0 1,069,186 - ABZR88_RS04475 0.15 -0.3 1,069,305 + ABZR88_RS04475 0.20 +1.1
Or see this region's nucleotide sequence