Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS04465

Experiment: Melibiose (C); 6 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS04460 and ABZR88_RS04465 are separated by 408 nucleotidesABZR88_RS04465 and ABZR88_RS04470 are separated by 271 nucleotidesABZR88_RS04470 and ABZR88_RS04475 are separated by 9 nucleotides ABZR88_RS04460: ABZR88_RS04460 - sialate O-acetylesterase, at 1,066,212 to 1,067,546 _RS04460 ABZR88_RS04465: ABZR88_RS04465 - hypothetical protein, at 1,067,955 to 1,068,329 _RS04465 ABZR88_RS04470: ABZR88_RS04470 - hypothetical protein, at 1,068,601 to 1,068,813 _RS04470 ABZR88_RS04475: ABZR88_RS04475 - DUF5686 and carboxypeptidase regulatory-like domain-containing protein, at 1,068,823 to 1,071,240 _RS04475 Position (kb) 1067 1068 1069Strain fitness (log2 ratio) -2 -1 0 1at 1066.958 kb on - strand, within ABZR88_RS04460at 1066.966 kb on - strand, within ABZR88_RS04460at 1067.054 kb on + strand, within ABZR88_RS04460at 1067.060 kb on + strand, within ABZR88_RS04460at 1067.100 kb on - strand, within ABZR88_RS04460at 1067.266 kb on - strand, within ABZR88_RS04460at 1067.415 kb on + strandat 1067.664 kb on + strandat 1067.665 kb on - strandat 1067.734 kb on - strandat 1067.746 kb on + strandat 1067.799 kb on - strandat 1067.805 kb on + strandat 1067.846 kb on + strandat 1068.044 kb on - strand, within ABZR88_RS04465at 1068.112 kb on - strand, within ABZR88_RS04465at 1068.382 kb on - strandat 1068.384 kb on + strandat 1068.568 kb on + strandat 1068.577 kb on - strandat 1068.581 kb on - strandat 1068.605 kb on + strandat 1068.606 kb on - strandat 1068.609 kb on + strandat 1068.674 kb on + strand, within ABZR88_RS04470at 1068.783 kb on + strand, within ABZR88_RS04470at 1068.783 kb on + strand, within ABZR88_RS04470at 1068.784 kb on - strand, within ABZR88_RS04470at 1068.784 kb on - strand, within ABZR88_RS04470at 1068.887 kb on + strandat 1068.963 kb on - strandat 1069.061 kb on + strandat 1069.078 kb on - strand, within ABZR88_RS04475at 1069.078 kb on - strand, within ABZR88_RS04475at 1069.124 kb on + strand, within ABZR88_RS04475at 1069.186 kb on - strand, within ABZR88_RS04475at 1069.305 kb on + strand, within ABZR88_RS04475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C); 6 days
remove
1,066,958 - ABZR88_RS04460 0.56 -0.7
1,066,966 - ABZR88_RS04460 0.56 -0.6
1,067,054 + ABZR88_RS04460 0.63 +0.0
1,067,060 + ABZR88_RS04460 0.64 +1.3
1,067,100 - ABZR88_RS04460 0.67 -0.2
1,067,266 - ABZR88_RS04460 0.79 -0.3
1,067,415 + +1.2
1,067,664 + +0.6
1,067,665 - -0.4
1,067,734 - -0.3
1,067,746 + -0.4
1,067,799 - +0.1
1,067,805 + -0.1
1,067,846 + -0.4
1,068,044 - ABZR88_RS04465 0.24 -0.2
1,068,112 - ABZR88_RS04465 0.42 -2.4
1,068,382 - -0.3
1,068,384 + +0.1
1,068,568 + +1.3
1,068,577 - +0.8
1,068,581 - -0.8
1,068,605 + -0.1
1,068,606 - -0.8
1,068,609 + -0.6
1,068,674 + ABZR88_RS04470 0.34 +0.3
1,068,783 + ABZR88_RS04470 0.85 -0.5
1,068,783 + ABZR88_RS04470 0.85 -1.1
1,068,784 - ABZR88_RS04470 0.86 +0.3
1,068,784 - ABZR88_RS04470 0.86 +0.9
1,068,887 + -0.2
1,068,963 - -1.0
1,069,061 + +0.5
1,069,078 - ABZR88_RS04475 0.11 -1.0
1,069,078 - ABZR88_RS04475 0.11 +0.1
1,069,124 + ABZR88_RS04475 0.12 +0.0
1,069,186 - ABZR88_RS04475 0.15 -0.3
1,069,305 + ABZR88_RS04475 0.20 +1.1

Or see this region's nucleotide sequence