Experiment: Melibiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02465 and ABZR88_RS02470 are separated by 65 nucleotides ABZR88_RS02470 and ABZR88_RS02475 are separated by 100 nucleotides ABZR88_RS02475 and ABZR88_RS02480 are separated by 1 nucleotides
ABZR88_RS02465: ABZR88_RS02465 - plasmid transfer protein, at 564,932 to 566,080
_RS02465
ABZR88_RS02470: ABZR88_RS02470 - helix-turn-helix domain-containing protein, at 566,146 to 566,403
_RS02470
ABZR88_RS02475: ABZR88_RS02475 - hypothetical protein, at 566,504 to 567,370
_RS02475
ABZR88_RS02480: ABZR88_RS02480 - hypothetical protein, at 567,372 to 568,466
_RS02480
Position (kb) 566
567 Strain fitness (log2 ratio) -1
0
1 at 565.219 kb on - strand, within ABZR88_RS02465 at 565.260 kb on + strand, within ABZR88_RS02465 at 565.723 kb on - strand, within ABZR88_RS02465 at 565.799 kb on + strand, within ABZR88_RS02465 at 565.799 kb on + strand, within ABZR88_RS02465 at 565.839 kb on + strand, within ABZR88_RS02465 at 565.839 kb on + strand, within ABZR88_RS02465 at 565.900 kb on - strand, within ABZR88_RS02465 at 565.924 kb on + strand, within ABZR88_RS02465 at 565.999 kb on - strand at 566.152 kb on - strand at 566.244 kb on + strand, within ABZR88_RS02470 at 566.244 kb on + strand, within ABZR88_RS02470 at 566.245 kb on - strand, within ABZR88_RS02470 at 566.247 kb on + strand, within ABZR88_RS02470 at 566.317 kb on + strand, within ABZR88_RS02470 at 566.416 kb on + strand at 566.525 kb on - strand at 566.671 kb on - strand, within ABZR88_RS02475 at 566.687 kb on - strand, within ABZR88_RS02475 at 566.734 kb on - strand, within ABZR88_RS02475 at 566.747 kb on + strand, within ABZR88_RS02475 at 566.750 kb on - strand, within ABZR88_RS02475 at 566.750 kb on - strand, within ABZR88_RS02475 at 566.750 kb on - strand, within ABZR88_RS02475 at 566.915 kb on - strand, within ABZR88_RS02475 at 567.160 kb on + strand, within ABZR88_RS02475 at 567.160 kb on + strand, within ABZR88_RS02475 at 567.161 kb on - strand, within ABZR88_RS02475 at 567.182 kb on + strand, within ABZR88_RS02475 at 567.183 kb on - strand, within ABZR88_RS02475 at 567.234 kb on + strand, within ABZR88_RS02475 at 567.266 kb on + strand, within ABZR88_RS02475 at 567.331 kb on + strand at 567.331 kb on + strand at 567.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C); 6 days remove 565,219 - ABZR88_RS02465 0.25 -0.6 565,260 + ABZR88_RS02465 0.29 -0.4 565,723 - ABZR88_RS02465 0.69 -1.3 565,799 + ABZR88_RS02465 0.75 -0.3 565,799 + ABZR88_RS02465 0.75 -0.3 565,839 + ABZR88_RS02465 0.79 +0.2 565,839 + ABZR88_RS02465 0.79 -0.8 565,900 - ABZR88_RS02465 0.84 -1.1 565,924 + ABZR88_RS02465 0.86 +0.2 565,999 - -0.5 566,152 - +0.1 566,244 + ABZR88_RS02470 0.38 +0.5 566,244 + ABZR88_RS02470 0.38 -0.6 566,245 - ABZR88_RS02470 0.38 -0.9 566,247 + ABZR88_RS02470 0.39 -1.1 566,317 + ABZR88_RS02470 0.66 -0.7 566,416 + -1.4 566,525 - -0.5 566,671 - ABZR88_RS02475 0.19 +1.7 566,687 - ABZR88_RS02475 0.21 -0.3 566,734 - ABZR88_RS02475 0.27 -1.7 566,747 + ABZR88_RS02475 0.28 +1.2 566,750 - ABZR88_RS02475 0.28 -1.2 566,750 - ABZR88_RS02475 0.28 -1.2 566,750 - ABZR88_RS02475 0.28 +0.6 566,915 - ABZR88_RS02475 0.47 +1.6 567,160 + ABZR88_RS02475 0.76 -0.5 567,160 + ABZR88_RS02475 0.76 +0.1 567,161 - ABZR88_RS02475 0.76 +0.3 567,182 + ABZR88_RS02475 0.78 +1.4 567,183 - ABZR88_RS02475 0.78 -0.6 567,234 + ABZR88_RS02475 0.84 -1.1 567,266 + ABZR88_RS02475 0.88 -0.7 567,331 + +0.3 567,331 + -0.5 567,332 - +0.1
Or see this region's nucleotide sequence