Experiment: Melibiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS01835 and ABZR88_RS01840 are separated by 20 nucleotides ABZR88_RS01840 and ABZR88_RS01845 are separated by 166 nucleotides
ABZR88_RS01835: ABZR88_RS01835 - sodium:solute symporter, at 418,662 to 420,230
_RS01835
ABZR88_RS01840: ABZR88_RS01840 - four-carbon acid sugar kinase family protein, at 420,251 to 421,408
_RS01840
ABZR88_RS01845: ABZR88_RS01845 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 421,575 to 422,618
_RS01845
Position (kb) 420
421
422 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 419.282 kb on + strand, within ABZR88_RS01835 at 419.364 kb on - strand, within ABZR88_RS01835 at 419.552 kb on + strand, within ABZR88_RS01835 at 419.723 kb on + strand, within ABZR88_RS01835 at 419.764 kb on + strand, within ABZR88_RS01835 at 419.765 kb on - strand, within ABZR88_RS01835 at 419.765 kb on - strand, within ABZR88_RS01835 at 419.775 kb on - strand, within ABZR88_RS01835 at 419.844 kb on + strand, within ABZR88_RS01835 at 419.906 kb on - strand, within ABZR88_RS01835 at 419.910 kb on - strand, within ABZR88_RS01835 at 419.961 kb on + strand, within ABZR88_RS01835 at 419.992 kb on - strand, within ABZR88_RS01835 at 420.208 kb on - strand at 420.279 kb on + strand at 420.279 kb on + strand at 420.422 kb on + strand, within ABZR88_RS01840 at 420.468 kb on - strand, within ABZR88_RS01840 at 420.649 kb on + strand, within ABZR88_RS01840 at 420.711 kb on + strand, within ABZR88_RS01840 at 421.029 kb on + strand, within ABZR88_RS01840 at 421.032 kb on + strand, within ABZR88_RS01840 at 421.032 kb on + strand, within ABZR88_RS01840 at 421.307 kb on - strand at 421.321 kb on + strand at 421.458 kb on + strand at 421.458 kb on + strand at 421.459 kb on - strand at 421.563 kb on + strand at 421.563 kb on + strand at 421.650 kb on + strand at 421.737 kb on + strand, within ABZR88_RS01845 at 421.738 kb on - strand, within ABZR88_RS01845
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C); 6 days remove 419,282 + ABZR88_RS01835 0.40 -1.6 419,364 - ABZR88_RS01835 0.45 -0.4 419,552 + ABZR88_RS01835 0.57 -0.1 419,723 + ABZR88_RS01835 0.68 +0.9 419,764 + ABZR88_RS01835 0.70 +2.9 419,765 - ABZR88_RS01835 0.70 +1.0 419,765 - ABZR88_RS01835 0.70 -0.7 419,775 - ABZR88_RS01835 0.71 +0.5 419,844 + ABZR88_RS01835 0.75 +1.6 419,906 - ABZR88_RS01835 0.79 -0.4 419,910 - ABZR88_RS01835 0.80 -0.7 419,961 + ABZR88_RS01835 0.83 -0.7 419,992 - ABZR88_RS01835 0.85 +1.0 420,208 - +1.0 420,279 + +0.3 420,279 + -0.3 420,422 + ABZR88_RS01840 0.15 -0.7 420,468 - ABZR88_RS01840 0.19 +1.2 420,649 + ABZR88_RS01840 0.34 -0.7 420,711 + ABZR88_RS01840 0.40 +0.1 421,029 + ABZR88_RS01840 0.67 -2.8 421,032 + ABZR88_RS01840 0.67 -0.3 421,032 + ABZR88_RS01840 0.67 -1.0 421,307 - -0.8 421,321 + -0.3 421,458 + -0.7 421,458 + -0.6 421,459 - -2.1 421,563 + +4.2 421,563 + +0.2 421,650 + +1.1 421,737 + ABZR88_RS01845 0.16 +0.7 421,738 - ABZR88_RS01845 0.16 +0.1
Or see this region's nucleotide sequence