Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12915 and ABZR88_RS12920 are separated by 526 nucleotides ABZR88_RS12920 and ABZR88_RS12925 are separated by 88 nucleotides
ABZR88_RS12915: ABZR88_RS12915 - SusC/RagA family TonB-linked outer membrane protein, at 3,172,967 to 3,176,155
_RS12915
ABZR88_RS12920: ABZR88_RS12920 - RNA polymerase sigma-70 factor, at 3,176,682 to 3,177,248
_RS12920
ABZR88_RS12925: ABZR88_RS12925 - FecR family protein, at 3,177,337 to 3,178,518
_RS12925
Position (kb)
3176
3177
3178 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3175.765 kb on + strand, within ABZR88_RS12915 at 3175.798 kb on + strand, within ABZR88_RS12915 at 3175.837 kb on + strand at 3175.905 kb on - strand at 3176.026 kb on + strand at 3176.364 kb on + strand at 3176.365 kb on - strand at 3176.446 kb on + strand at 3176.505 kb on + strand at 3176.618 kb on + strand at 3176.726 kb on - strand at 3176.789 kb on - strand, within ABZR88_RS12920 at 3176.870 kb on + strand, within ABZR88_RS12920 at 3176.876 kb on + strand, within ABZR88_RS12920 at 3176.937 kb on - strand, within ABZR88_RS12920 at 3176.937 kb on - strand, within ABZR88_RS12920 at 3177.029 kb on - strand, within ABZR88_RS12920 at 3177.294 kb on + strand at 3177.328 kb on + strand at 3177.357 kb on + strand at 3177.358 kb on - strand at 3177.362 kb on - strand at 3177.566 kb on + strand, within ABZR88_RS12925 at 3177.592 kb on + strand, within ABZR88_RS12925 at 3177.890 kb on - strand, within ABZR88_RS12925 at 3177.982 kb on + strand, within ABZR88_RS12925 at 3178.036 kb on + strand, within ABZR88_RS12925 at 3178.150 kb on + strand, within ABZR88_RS12925 at 3178.151 kb on - strand, within ABZR88_RS12925 at 3178.213 kb on - strand, within ABZR88_RS12925
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 3,175,765 + ABZR88_RS12915 0.88 -0.4 3,175,798 + ABZR88_RS12915 0.89 -2.1 3,175,837 + +2.0 3,175,905 - +0.2 3,176,026 + -0.0 3,176,364 + +0.9 3,176,365 - -1.6 3,176,446 + +0.7 3,176,505 + -0.1 3,176,618 + -0.3 3,176,726 - -0.8 3,176,789 - ABZR88_RS12920 0.19 +0.2 3,176,870 + ABZR88_RS12920 0.33 +1.2 3,176,876 + ABZR88_RS12920 0.34 +0.0 3,176,937 - ABZR88_RS12920 0.45 +0.5 3,176,937 - ABZR88_RS12920 0.45 +0.1 3,177,029 - ABZR88_RS12920 0.61 +0.2 3,177,294 + +0.5 3,177,328 + -0.6 3,177,357 + +0.8 3,177,358 - -0.7 3,177,362 - -0.3 3,177,566 + ABZR88_RS12925 0.19 -0.6 3,177,592 + ABZR88_RS12925 0.22 -0.4 3,177,890 - ABZR88_RS12925 0.47 +0.8 3,177,982 + ABZR88_RS12925 0.55 +0.5 3,178,036 + ABZR88_RS12925 0.59 +1.3 3,178,150 + ABZR88_RS12925 0.69 +1.2 3,178,151 - ABZR88_RS12925 0.69 +1.6 3,178,213 - ABZR88_RS12925 0.74 +1.1
Or see this region's nucleotide sequence