Experiment: D-Cellobiose (C); 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS22060 and ABZR88_RS22065 are separated by 2 nucleotides ABZR88_RS22065 and ABZR88_RS22070 overlap by 20 nucleotides ABZR88_RS22070 and ABZR88_RS22075 are separated by 452 nucleotides
ABZR88_RS22060: ABZR88_RS22060 - hypothetical protein, at 5,285,152 to 5,286,297
_RS22060
ABZR88_RS22065: ABZR88_RS22065 - regulatory iron-sulfur-containing complex subunit RicT, at 5,286,300 to 5,287,856
_RS22065
ABZR88_RS22070: ABZR88_RS22070 - gliding motility lipoprotein GldH, at 5,287,837 to 5,288,319
_RS22070
ABZR88_RS22075: ABZR88_RS22075 - M14 metallopeptidase family protein, at 5,288,772 to 5,291,306
_RS22075
Position (kb) 5286
5287
5288 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5286.287 kb on + strand at 5286.295 kb on + strand at 5287.664 kb on + strand, within ABZR88_RS22065 at 5287.885 kb on - strand at 5288.029 kb on - strand, within ABZR88_RS22070 at 5288.318 kb on - strand at 5288.541 kb on + strand at 5288.561 kb on - strand at 5288.592 kb on + strand at 5288.592 kb on + strand at 5288.647 kb on + strand at 5288.647 kb on + strand at 5288.698 kb on - strand at 5288.798 kb on - strand at 5288.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days remove 5,286,287 + -0.0 5,286,295 + -1.3 5,287,664 + ABZR88_RS22065 0.88 +0.6 5,287,885 - -1.4 5,288,029 - ABZR88_RS22070 0.40 -3.0 5,288,318 - -0.4 5,288,541 + +0.2 5,288,561 - -1.8 5,288,592 + -0.7 5,288,592 + +1.0 5,288,647 + +1.3 5,288,647 + +0.6 5,288,698 - -0.4 5,288,798 - -0.9 5,288,798 - +0.8
Or see this region's nucleotide sequence