Experiment: D-Cellobiose (C); 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS21130 and ABZR88_RS21135 are separated by 141 nucleotides ABZR88_RS21135 and ABZR88_RS21140 are separated by 148 nucleotides ABZR88_RS21140 and ABZR88_RS21145 are separated by 152 nucleotides
ABZR88_RS21130: ABZR88_RS21130 - DUF4293 domain-containing protein, at 5,105,235 to 5,105,702
_RS21130
ABZR88_RS21135: ABZR88_RS21135 - hypothetical protein, at 5,105,844 to 5,106,248
_RS21135
ABZR88_RS21140: ABZR88_RS21140 - tRNA pseudouridine(38-40) synthase TruA, at 5,106,397 to 5,107,191
_RS21140
ABZR88_RS21145: ABZR88_RS21145 - ABC transporter ATP-binding protein, at 5,107,344 to 5,109,170
_RS21145
Position (kb) 5106
5107
5108 Strain fitness (log2 ratio) -1
0
1
2 at 5105.851 kb on + strand at 5105.883 kb on + strand at 5105.886 kb on + strand, within ABZR88_RS21135 at 5105.892 kb on - strand, within ABZR88_RS21135 at 5105.952 kb on + strand, within ABZR88_RS21135 at 5106.026 kb on - strand, within ABZR88_RS21135 at 5106.075 kb on - strand, within ABZR88_RS21135 at 5106.100 kb on + strand, within ABZR88_RS21135 at 5106.200 kb on + strand, within ABZR88_RS21135 at 5106.246 kb on + strand at 5106.344 kb on + strand at 5106.627 kb on + strand, within ABZR88_RS21140 at 5106.628 kb on - strand, within ABZR88_RS21140 at 5106.695 kb on + strand, within ABZR88_RS21140 at 5106.696 kb on - strand, within ABZR88_RS21140 at 5106.775 kb on + strand, within ABZR88_RS21140 at 5106.776 kb on - strand, within ABZR88_RS21140 at 5106.786 kb on + strand, within ABZR88_RS21140 at 5106.889 kb on + strand, within ABZR88_RS21140 at 5106.891 kb on + strand, within ABZR88_RS21140 at 5106.892 kb on - strand, within ABZR88_RS21140 at 5106.946 kb on - strand, within ABZR88_RS21140 at 5107.073 kb on + strand, within ABZR88_RS21140 at 5107.101 kb on - strand, within ABZR88_RS21140 at 5107.234 kb on - strand at 5107.278 kb on + strand at 5107.482 kb on - strand at 5107.483 kb on + strand at 5107.509 kb on + strand at 5107.593 kb on + strand, within ABZR88_RS21145 at 5107.895 kb on + strand, within ABZR88_RS21145 at 5107.895 kb on + strand, within ABZR88_RS21145 at 5108.088 kb on + strand, within ABZR88_RS21145
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days remove 5,105,851 + +0.1 5,105,883 + +0.2 5,105,886 + ABZR88_RS21135 0.10 +1.2 5,105,892 - ABZR88_RS21135 0.12 +0.5 5,105,952 + ABZR88_RS21135 0.27 -0.2 5,106,026 - ABZR88_RS21135 0.45 +0.7 5,106,075 - ABZR88_RS21135 0.57 -0.3 5,106,100 + ABZR88_RS21135 0.63 +0.6 5,106,200 + ABZR88_RS21135 0.88 +0.7 5,106,246 + +0.3 5,106,344 + +0.3 5,106,627 + ABZR88_RS21140 0.29 +0.7 5,106,628 - ABZR88_RS21140 0.29 +1.3 5,106,695 + ABZR88_RS21140 0.37 -0.1 5,106,696 - ABZR88_RS21140 0.38 +0.5 5,106,775 + ABZR88_RS21140 0.48 +0.6 5,106,776 - ABZR88_RS21140 0.48 +0.9 5,106,786 + ABZR88_RS21140 0.49 +0.2 5,106,889 + ABZR88_RS21140 0.62 +2.5 5,106,891 + ABZR88_RS21140 0.62 +1.1 5,106,892 - ABZR88_RS21140 0.62 +2.0 5,106,946 - ABZR88_RS21140 0.69 +0.9 5,107,073 + ABZR88_RS21140 0.85 +1.2 5,107,101 - ABZR88_RS21140 0.89 +0.5 5,107,234 - +0.3 5,107,278 + -0.1 5,107,482 - +0.4 5,107,483 + +0.2 5,107,509 + -0.1 5,107,593 + ABZR88_RS21145 0.14 +0.6 5,107,895 + ABZR88_RS21145 0.30 +0.5 5,107,895 + ABZR88_RS21145 0.30 +0.3 5,108,088 + ABZR88_RS21145 0.41 +0.1
Or see this region's nucleotide sequence