Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS17595

Experiment: D-Cellobiose (C); 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS17590 and ABZR88_RS17595 are separated by 153 nucleotidesABZR88_RS17595 and ABZR88_RS17600 overlap by 4 nucleotides ABZR88_RS17590: ABZR88_RS17590 - glycosyltransferase family 4 protein, at 4,302,339 to 4,303,379 _RS17590 ABZR88_RS17595: ABZR88_RS17595 - glycosyltransferase family 2 protein, at 4,303,533 to 4,304,411 _RS17595 ABZR88_RS17600: ABZR88_RS17600 - hypothetical protein, at 4,304,408 to 4,305,598 _RS17600 Position (kb) 4303 4304 4305Strain fitness (log2 ratio) -1 0 1 2at 4302.574 kb on + strand, within ABZR88_RS17590at 4302.581 kb on + strand, within ABZR88_RS17590at 4302.586 kb on - strand, within ABZR88_RS17590at 4302.776 kb on + strand, within ABZR88_RS17590at 4302.791 kb on + strand, within ABZR88_RS17590at 4302.837 kb on + strand, within ABZR88_RS17590at 4302.963 kb on - strand, within ABZR88_RS17590at 4302.968 kb on + strand, within ABZR88_RS17590at 4303.125 kb on - strand, within ABZR88_RS17590at 4303.208 kb on + strand, within ABZR88_RS17590at 4303.230 kb on + strand, within ABZR88_RS17590at 4303.266 kb on - strand, within ABZR88_RS17590at 4303.302 kb on + strandat 4303.302 kb on + strandat 4303.315 kb on - strandat 4303.383 kb on - strandat 4303.511 kb on + strandat 4303.641 kb on - strand, within ABZR88_RS17595at 4303.642 kb on + strand, within ABZR88_RS17595at 4303.651 kb on + strand, within ABZR88_RS17595at 4303.652 kb on - strand, within ABZR88_RS17595at 4303.797 kb on - strand, within ABZR88_RS17595at 4303.839 kb on - strand, within ABZR88_RS17595at 4303.840 kb on + strand, within ABZR88_RS17595at 4303.857 kb on - strand, within ABZR88_RS17595at 4303.893 kb on + strand, within ABZR88_RS17595at 4303.894 kb on - strand, within ABZR88_RS17595at 4303.895 kb on + strand, within ABZR88_RS17595at 4303.895 kb on + strand, within ABZR88_RS17595at 4303.973 kb on + strand, within ABZR88_RS17595at 4304.051 kb on + strand, within ABZR88_RS17595at 4304.159 kb on - strand, within ABZR88_RS17595at 4304.265 kb on - strand, within ABZR88_RS17595at 4304.394 kb on + strandat 4304.467 kb on + strandat 4304.467 kb on + strandat 4304.534 kb on - strand, within ABZR88_RS17600at 4304.541 kb on - strand, within ABZR88_RS17600at 4304.595 kb on - strand, within ABZR88_RS17600at 4304.617 kb on - strand, within ABZR88_RS17600at 4304.617 kb on - strand, within ABZR88_RS17600at 4304.658 kb on - strand, within ABZR88_RS17600at 4304.742 kb on + strand, within ABZR88_RS17600at 4304.749 kb on + strand, within ABZR88_RS17600at 4304.753 kb on - strand, within ABZR88_RS17600at 4304.791 kb on + strand, within ABZR88_RS17600at 4304.835 kb on + strand, within ABZR88_RS17600at 4304.895 kb on + strand, within ABZR88_RS17600at 4304.923 kb on + strand, within ABZR88_RS17600at 4305.001 kb on + strand, within ABZR88_RS17600at 4305.002 kb on - strand, within ABZR88_RS17600at 4305.004 kb on - strand, within ABZR88_RS17600at 4305.036 kb on + strand, within ABZR88_RS17600at 4305.074 kb on - strand, within ABZR88_RS17600at 4305.188 kb on - strand, within ABZR88_RS17600at 4305.209 kb on - strand, within ABZR88_RS17600

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days
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4,302,574 + ABZR88_RS17590 0.23 -1.3
4,302,581 + ABZR88_RS17590 0.23 +0.6
4,302,586 - ABZR88_RS17590 0.24 +0.7
4,302,776 + ABZR88_RS17590 0.42 -1.2
4,302,791 + ABZR88_RS17590 0.43 +0.9
4,302,837 + ABZR88_RS17590 0.48 +0.6
4,302,963 - ABZR88_RS17590 0.60 -0.2
4,302,968 + ABZR88_RS17590 0.60 +0.1
4,303,125 - ABZR88_RS17590 0.76 -0.1
4,303,208 + ABZR88_RS17590 0.83 +0.7
4,303,230 + ABZR88_RS17590 0.86 +0.5
4,303,266 - ABZR88_RS17590 0.89 +0.1
4,303,302 + +0.8
4,303,302 + +0.8
4,303,315 - +0.3
4,303,383 - +0.2
4,303,511 + +1.0
4,303,641 - ABZR88_RS17595 0.12 +0.7
4,303,642 + ABZR88_RS17595 0.12 +1.7
4,303,651 + ABZR88_RS17595 0.13 +0.6
4,303,652 - ABZR88_RS17595 0.14 +0.6
4,303,797 - ABZR88_RS17595 0.30 +0.5
4,303,839 - ABZR88_RS17595 0.35 -0.6
4,303,840 + ABZR88_RS17595 0.35 +2.4
4,303,857 - ABZR88_RS17595 0.37 +1.0
4,303,893 + ABZR88_RS17595 0.41 +0.8
4,303,894 - ABZR88_RS17595 0.41 +0.5
4,303,895 + ABZR88_RS17595 0.41 +0.8
4,303,895 + ABZR88_RS17595 0.41 +0.7
4,303,973 + ABZR88_RS17595 0.50 +1.1
4,304,051 + ABZR88_RS17595 0.59 +0.6
4,304,159 - ABZR88_RS17595 0.71 +0.6
4,304,265 - ABZR88_RS17595 0.83 +0.3
4,304,394 + +1.0
4,304,467 + +0.9
4,304,467 + -1.2
4,304,534 - ABZR88_RS17600 0.11 +0.9
4,304,541 - ABZR88_RS17600 0.11 +0.2
4,304,595 - ABZR88_RS17600 0.16 +0.2
4,304,617 - ABZR88_RS17600 0.18 +1.9
4,304,617 - ABZR88_RS17600 0.18 -0.1
4,304,658 - ABZR88_RS17600 0.21 +1.0
4,304,742 + ABZR88_RS17600 0.28 +1.1
4,304,749 + ABZR88_RS17600 0.29 +0.7
4,304,753 - ABZR88_RS17600 0.29 +0.7
4,304,791 + ABZR88_RS17600 0.32 +1.0
4,304,835 + ABZR88_RS17600 0.36 +0.3
4,304,895 + ABZR88_RS17600 0.41 +0.4
4,304,923 + ABZR88_RS17600 0.43 +0.4
4,305,001 + ABZR88_RS17600 0.50 -0.1
4,305,002 - ABZR88_RS17600 0.50 +1.0
4,305,004 - ABZR88_RS17600 0.50 +0.5
4,305,036 + ABZR88_RS17600 0.53 +0.6
4,305,074 - ABZR88_RS17600 0.56 -0.1
4,305,188 - ABZR88_RS17600 0.65 -0.0
4,305,209 - ABZR88_RS17600 0.67 +0.3

Or see this region's nucleotide sequence