Experiment: D-Cellobiose (C); 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16995 and ABZR88_RS17000 are separated by 102 nucleotides ABZR88_RS17000 and ABZR88_RS17005 are separated by 11 nucleotides ABZR88_RS17005 and ABZR88_RS17010 are separated by 95 nucleotides
ABZR88_RS16995: ABZR88_RS16995 - rod shape-determining protein RodA, at 4,170,184 to 4,171,458
_RS16995
ABZR88_RS17000: ABZR88_RS17000 - hypothetical protein, at 4,171,561 to 4,171,737
_RS17000
ABZR88_RS17005: ABZR88_RS17005 - peptidylprolyl isomerase, at 4,171,749 to 4,172,210
_RS17005
ABZR88_RS17010: ABZR88_RS17010 - DUF5606 domain-containing protein, at 4,172,306 to 4,172,809
_RS17010
Position (kb)
4171
4172 Strain fitness (log2 ratio)
-1
0
1 at 4171.434 kb on + strand at 4171.456 kb on + strand at 4171.482 kb on - strand at 4171.492 kb on - strand at 4171.492 kb on - strand at 4171.558 kb on - strand at 4171.719 kb on + strand, within ABZR88_RS17000 at 4171.748 kb on + strand at 4171.767 kb on - strand at 4171.944 kb on + strand, within ABZR88_RS17005 at 4172.007 kb on + strand, within ABZR88_RS17005 at 4172.023 kb on + strand, within ABZR88_RS17005 at 4172.023 kb on + strand, within ABZR88_RS17005 at 4172.155 kb on + strand, within ABZR88_RS17005 at 4172.320 kb on + strand at 4172.326 kb on - strand at 4172.326 kb on - strand at 4172.326 kb on - strand at 4172.611 kb on - strand, within ABZR88_RS17010 at 4172.611 kb on - strand, within ABZR88_RS17010 at 4172.722 kb on - strand, within ABZR88_RS17010 at 4172.722 kb on - strand, within ABZR88_RS17010 at 4172.733 kb on + strand, within ABZR88_RS17010 at 4172.733 kb on + strand, within ABZR88_RS17010 at 4172.734 kb on - strand, within ABZR88_RS17010
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days remove 4,171,434 + +0.2 4,171,456 + -0.5 4,171,482 - -0.5 4,171,492 - -0.4 4,171,492 - +0.6 4,171,558 - -0.3 4,171,719 + ABZR88_RS17000 0.89 +0.7 4,171,748 + -1.6 4,171,767 - -0.3 4,171,944 + ABZR88_RS17005 0.42 +0.5 4,172,007 + ABZR88_RS17005 0.56 -0.1 4,172,023 + ABZR88_RS17005 0.59 +0.4 4,172,023 + ABZR88_RS17005 0.59 +0.7 4,172,155 + ABZR88_RS17005 0.88 -0.2 4,172,320 + -0.8 4,172,326 - -0.5 4,172,326 - -0.4 4,172,326 - +0.2 4,172,611 - ABZR88_RS17010 0.61 -0.9 4,172,611 - ABZR88_RS17010 0.61 -0.8 4,172,722 - ABZR88_RS17010 0.83 -0.3 4,172,722 - ABZR88_RS17010 0.83 -0.6 4,172,733 + ABZR88_RS17010 0.85 -0.5 4,172,733 + ABZR88_RS17010 0.85 -0.7 4,172,734 - ABZR88_RS17010 0.85 -0.8
Or see this region's nucleotide sequence