Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS17000

Experiment: D-Cellobiose (C); 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS16995 and ABZR88_RS17000 are separated by 102 nucleotidesABZR88_RS17000 and ABZR88_RS17005 are separated by 11 nucleotidesABZR88_RS17005 and ABZR88_RS17010 are separated by 95 nucleotides ABZR88_RS16995: ABZR88_RS16995 - rod shape-determining protein RodA, at 4,170,184 to 4,171,458 _RS16995 ABZR88_RS17000: ABZR88_RS17000 - hypothetical protein, at 4,171,561 to 4,171,737 _RS17000 ABZR88_RS17005: ABZR88_RS17005 - peptidylprolyl isomerase, at 4,171,749 to 4,172,210 _RS17005 ABZR88_RS17010: ABZR88_RS17010 - DUF5606 domain-containing protein, at 4,172,306 to 4,172,809 _RS17010 Position (kb) 4171 4172Strain fitness (log2 ratio) -1 0 1at 4171.434 kb on + strandat 4171.456 kb on + strandat 4171.482 kb on - strandat 4171.492 kb on - strandat 4171.492 kb on - strandat 4171.558 kb on - strandat 4171.719 kb on + strand, within ABZR88_RS17000at 4171.748 kb on + strandat 4171.767 kb on - strandat 4171.944 kb on + strand, within ABZR88_RS17005at 4172.007 kb on + strand, within ABZR88_RS17005at 4172.023 kb on + strand, within ABZR88_RS17005at 4172.023 kb on + strand, within ABZR88_RS17005at 4172.155 kb on + strand, within ABZR88_RS17005at 4172.320 kb on + strandat 4172.326 kb on - strandat 4172.326 kb on - strandat 4172.326 kb on - strandat 4172.611 kb on - strand, within ABZR88_RS17010at 4172.611 kb on - strand, within ABZR88_RS17010at 4172.722 kb on - strand, within ABZR88_RS17010at 4172.722 kb on - strand, within ABZR88_RS17010at 4172.733 kb on + strand, within ABZR88_RS17010at 4172.733 kb on + strand, within ABZR88_RS17010at 4172.734 kb on - strand, within ABZR88_RS17010

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days
remove
4,171,434 + +0.2
4,171,456 + -0.5
4,171,482 - -0.5
4,171,492 - -0.4
4,171,492 - +0.6
4,171,558 - -0.3
4,171,719 + ABZR88_RS17000 0.89 +0.7
4,171,748 + -1.6
4,171,767 - -0.3
4,171,944 + ABZR88_RS17005 0.42 +0.5
4,172,007 + ABZR88_RS17005 0.56 -0.1
4,172,023 + ABZR88_RS17005 0.59 +0.4
4,172,023 + ABZR88_RS17005 0.59 +0.7
4,172,155 + ABZR88_RS17005 0.88 -0.2
4,172,320 + -0.8
4,172,326 - -0.5
4,172,326 - -0.4
4,172,326 - +0.2
4,172,611 - ABZR88_RS17010 0.61 -0.9
4,172,611 - ABZR88_RS17010 0.61 -0.8
4,172,722 - ABZR88_RS17010 0.83 -0.3
4,172,722 - ABZR88_RS17010 0.83 -0.6
4,172,733 + ABZR88_RS17010 0.85 -0.5
4,172,733 + ABZR88_RS17010 0.85 -0.7
4,172,734 - ABZR88_RS17010 0.85 -0.8

Or see this region's nucleotide sequence