Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16920

Experiment: D-Cellobiose (C); 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS16910 and ABZR88_RS16915 are separated by 88 nucleotidesABZR88_RS16915 and ABZR88_RS16920 overlap by 4 nucleotidesABZR88_RS16920 and ABZR88_RS16925 are separated by 537 nucleotides ABZR88_RS16910: ABZR88_RS16910 - nitrite reductase large subunit NirB, at 4,147,512 to 4,150,001 _RS16910 ABZR88_RS16915: ABZR88_RS16915 - nitrite reductase small subunit NirD, at 4,150,090 to 4,150,440 _RS16915 ABZR88_RS16920: ABZR88_RS16920 - Crp/Fnr family transcriptional regulator, at 4,150,437 to 4,151,087 _RS16920 ABZR88_RS16925: ABZR88_RS16925 - alginate export family protein, at 4,151,625 to 4,153,157 _RS16925 Position (kb) 4150 4151 4152Strain fitness (log2 ratio) -1 0 1 2at 4149.582 kb on - strand, within ABZR88_RS16910at 4149.609 kb on + strand, within ABZR88_RS16910at 4149.783 kb on + strandat 4149.887 kb on - strandat 4149.889 kb on + strandat 4149.904 kb on + strandat 4150.005 kb on + strandat 4150.005 kb on + strandat 4150.006 kb on - strandat 4150.010 kb on - strandat 4150.026 kb on - strandat 4150.037 kb on + strandat 4150.394 kb on - strand, within ABZR88_RS16915at 4150.514 kb on + strand, within ABZR88_RS16920at 4150.562 kb on + strand, within ABZR88_RS16920at 4150.665 kb on + strand, within ABZR88_RS16920at 4150.678 kb on - strand, within ABZR88_RS16920at 4150.827 kb on + strand, within ABZR88_RS16920at 4150.844 kb on + strand, within ABZR88_RS16920at 4150.845 kb on - strand, within ABZR88_RS16920at 4150.922 kb on + strand, within ABZR88_RS16920at 4150.949 kb on + strand, within ABZR88_RS16920at 4150.950 kb on - strand, within ABZR88_RS16920at 4150.973 kb on - strand, within ABZR88_RS16920at 4151.712 kb on - strandat 4151.757 kb on + strandat 4151.837 kb on + strand, within ABZR88_RS16925at 4151.960 kb on - strand, within ABZR88_RS16925at 4151.960 kb on - strand, within ABZR88_RS16925at 4151.964 kb on - strand, within ABZR88_RS16925

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days
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4,149,582 - ABZR88_RS16910 0.83 +0.7
4,149,609 + ABZR88_RS16910 0.84 +0.5
4,149,783 + +0.6
4,149,887 - -0.4
4,149,889 + +0.5
4,149,904 + +0.7
4,150,005 + -0.7
4,150,005 + +0.2
4,150,006 - +2.4
4,150,010 - -0.3
4,150,026 - -0.3
4,150,037 + +0.2
4,150,394 - ABZR88_RS16915 0.87 -0.6
4,150,514 + ABZR88_RS16920 0.12 +1.4
4,150,562 + ABZR88_RS16920 0.19 +1.7
4,150,665 + ABZR88_RS16920 0.35 +1.4
4,150,678 - ABZR88_RS16920 0.37 +0.4
4,150,827 + ABZR88_RS16920 0.60 +1.1
4,150,844 + ABZR88_RS16920 0.63 +1.9
4,150,845 - ABZR88_RS16920 0.63 +0.1
4,150,922 + ABZR88_RS16920 0.75 +1.3
4,150,949 + ABZR88_RS16920 0.79 +0.5
4,150,950 - ABZR88_RS16920 0.79 +1.2
4,150,973 - ABZR88_RS16920 0.82 -0.3
4,151,712 - -1.0
4,151,757 + +0.6
4,151,837 + ABZR88_RS16925 0.14 +0.2
4,151,960 - ABZR88_RS16925 0.22 -0.7
4,151,960 - ABZR88_RS16925 0.22 -1.1
4,151,964 - ABZR88_RS16925 0.22 -0.2

Or see this region's nucleotide sequence