Experiment: D-Cellobiose (C); 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16910 and ABZR88_RS16915 are separated by 88 nucleotides ABZR88_RS16915 and ABZR88_RS16920 overlap by 4 nucleotides ABZR88_RS16920 and ABZR88_RS16925 are separated by 537 nucleotides
ABZR88_RS16910: ABZR88_RS16910 - nitrite reductase large subunit NirB, at 4,147,512 to 4,150,001
_RS16910
ABZR88_RS16915: ABZR88_RS16915 - nitrite reductase small subunit NirD, at 4,150,090 to 4,150,440
_RS16915
ABZR88_RS16920: ABZR88_RS16920 - Crp/Fnr family transcriptional regulator, at 4,150,437 to 4,151,087
_RS16920
ABZR88_RS16925: ABZR88_RS16925 - alginate export family protein, at 4,151,625 to 4,153,157
_RS16925
Position (kb)
4150
4151
4152 Strain fitness (log2 ratio)
-1
0
1
2 at 4149.582 kb on - strand, within ABZR88_RS16910 at 4149.609 kb on + strand, within ABZR88_RS16910 at 4149.783 kb on + strand at 4149.887 kb on - strand at 4149.889 kb on + strand at 4149.904 kb on + strand at 4150.005 kb on + strand at 4150.005 kb on + strand at 4150.006 kb on - strand at 4150.010 kb on - strand at 4150.026 kb on - strand at 4150.037 kb on + strand at 4150.394 kb on - strand, within ABZR88_RS16915 at 4150.514 kb on + strand, within ABZR88_RS16920 at 4150.562 kb on + strand, within ABZR88_RS16920 at 4150.665 kb on + strand, within ABZR88_RS16920 at 4150.678 kb on - strand, within ABZR88_RS16920 at 4150.827 kb on + strand, within ABZR88_RS16920 at 4150.844 kb on + strand, within ABZR88_RS16920 at 4150.845 kb on - strand, within ABZR88_RS16920 at 4150.922 kb on + strand, within ABZR88_RS16920 at 4150.949 kb on + strand, within ABZR88_RS16920 at 4150.950 kb on - strand, within ABZR88_RS16920 at 4150.973 kb on - strand, within ABZR88_RS16920 at 4151.712 kb on - strand at 4151.757 kb on + strand at 4151.837 kb on + strand, within ABZR88_RS16925 at 4151.960 kb on - strand, within ABZR88_RS16925 at 4151.960 kb on - strand, within ABZR88_RS16925 at 4151.964 kb on - strand, within ABZR88_RS16925
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days remove 4,149,582 - ABZR88_RS16910 0.83 +0.7 4,149,609 + ABZR88_RS16910 0.84 +0.5 4,149,783 + +0.6 4,149,887 - -0.4 4,149,889 + +0.5 4,149,904 + +0.7 4,150,005 + -0.7 4,150,005 + +0.2 4,150,006 - +2.4 4,150,010 - -0.3 4,150,026 - -0.3 4,150,037 + +0.2 4,150,394 - ABZR88_RS16915 0.87 -0.6 4,150,514 + ABZR88_RS16920 0.12 +1.4 4,150,562 + ABZR88_RS16920 0.19 +1.7 4,150,665 + ABZR88_RS16920 0.35 +1.4 4,150,678 - ABZR88_RS16920 0.37 +0.4 4,150,827 + ABZR88_RS16920 0.60 +1.1 4,150,844 + ABZR88_RS16920 0.63 +1.9 4,150,845 - ABZR88_RS16920 0.63 +0.1 4,150,922 + ABZR88_RS16920 0.75 +1.3 4,150,949 + ABZR88_RS16920 0.79 +0.5 4,150,950 - ABZR88_RS16920 0.79 +1.2 4,150,973 - ABZR88_RS16920 0.82 -0.3 4,151,712 - -1.0 4,151,757 + +0.6 4,151,837 + ABZR88_RS16925 0.14 +0.2 4,151,960 - ABZR88_RS16925 0.22 -0.7 4,151,960 - ABZR88_RS16925 0.22 -1.1 4,151,964 - ABZR88_RS16925 0.22 -0.2
Or see this region's nucleotide sequence