Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15760

Experiment: D-Cellobiose (C); 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15755 and ABZR88_RS15760 are separated by 264 nucleotidesABZR88_RS15760 and ABZR88_RS15765 are separated by 66 nucleotidesABZR88_RS15765 and ABZR88_RS15770 are separated by 51 nucleotides ABZR88_RS15755: ABZR88_RS15755 - NADH-quinone oxidoreductase subunit NuoH, at 3,888,436 to 3,889,506 _RS15755 ABZR88_RS15760: ABZR88_RS15760 - glutamate racemase, at 3,889,771 to 3,890,601 _RS15760 ABZR88_RS15765: ABZR88_RS15765 - OmpH family outer membrane protein, at 3,890,668 to 3,891,210 _RS15765 ABZR88_RS15770: ABZR88_RS15770 - OmpH family outer membrane protein, at 3,891,262 to 3,891,792 _RS15770 Position (kb) 3889 3890 3891Strain fitness (log2 ratio) -1 0 1 2at 3889.985 kb on + strand, within ABZR88_RS15760at 3890.005 kb on + strand, within ABZR88_RS15760at 3890.162 kb on + strand, within ABZR88_RS15760at 3890.338 kb on + strand, within ABZR88_RS15760at 3890.339 kb on - strand, within ABZR88_RS15760at 3890.350 kb on - strand, within ABZR88_RS15760at 3890.439 kb on + strand, within ABZR88_RS15760at 3890.458 kb on - strand, within ABZR88_RS15760at 3890.508 kb on - strand, within ABZR88_RS15760at 3890.581 kb on + strandat 3890.644 kb on + strandat 3891.339 kb on - strand, within ABZR88_RS15770at 3891.339 kb on - strand, within ABZR88_RS15770at 3891.419 kb on - strand, within ABZR88_RS15770at 3891.566 kb on - strand, within ABZR88_RS15770

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days
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3,889,985 + ABZR88_RS15760 0.26 +0.1
3,890,005 + ABZR88_RS15760 0.28 +0.3
3,890,162 + ABZR88_RS15760 0.47 +1.1
3,890,338 + ABZR88_RS15760 0.68 +1.1
3,890,339 - ABZR88_RS15760 0.68 +1.3
3,890,350 - ABZR88_RS15760 0.70 +1.3
3,890,439 + ABZR88_RS15760 0.80 +1.0
3,890,458 - ABZR88_RS15760 0.83 +1.3
3,890,508 - ABZR88_RS15760 0.89 -0.9
3,890,581 + +1.2
3,890,644 + +1.8
3,891,339 - ABZR88_RS15770 0.15 -1.4
3,891,339 - ABZR88_RS15770 0.15 -0.2
3,891,419 - ABZR88_RS15770 0.30 -0.6
3,891,566 - ABZR88_RS15770 0.57 -0.4

Or see this region's nucleotide sequence