Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15535

Experiment: D-Cellobiose (C); 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15530 and ABZR88_RS15535 are separated by 224 nucleotidesABZR88_RS15535 and ABZR88_RS15540 are separated by 103 nucleotides ABZR88_RS15530: ABZR88_RS15530 - lipid-binding SYLF domain-containing protein, at 3,838,503 to 3,839,186 _RS15530 ABZR88_RS15535: ABZR88_RS15535 - acyl transferase, at 3,839,411 to 3,840,391 _RS15535 ABZR88_RS15540: ABZR88_RS15540 - S8 family serine peptidase, at 3,840,495 to 3,842,135 _RS15540 Position (kb) 3839 3840 3841Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3838.433 kb on + strandat 3838.485 kb on - strandat 3838.498 kb on + strandat 3838.508 kb on + strandat 3838.532 kb on + strandat 3838.542 kb on + strandat 3838.542 kb on + strandat 3838.687 kb on + strand, within ABZR88_RS15530at 3838.708 kb on - strand, within ABZR88_RS15530at 3838.809 kb on + strand, within ABZR88_RS15530at 3838.810 kb on - strand, within ABZR88_RS15530at 3838.980 kb on - strand, within ABZR88_RS15530at 3839.191 kb on - strandat 3839.206 kb on - strandat 3839.507 kb on - strandat 3839.510 kb on + strand, within ABZR88_RS15535at 3839.620 kb on + strand, within ABZR88_RS15535at 3839.660 kb on - strand, within ABZR88_RS15535at 3839.689 kb on - strand, within ABZR88_RS15535at 3839.895 kb on + strand, within ABZR88_RS15535at 3839.896 kb on - strand, within ABZR88_RS15535at 3840.065 kb on - strand, within ABZR88_RS15535at 3840.361 kb on + strandat 3840.362 kb on - strandat 3840.424 kb on + strandat 3840.428 kb on + strandat 3840.521 kb on - strandat 3840.539 kb on - strandat 3840.633 kb on + strandat 3840.769 kb on + strand, within ABZR88_RS15540at 3840.791 kb on - strand, within ABZR88_RS15540at 3840.791 kb on - strand, within ABZR88_RS15540at 3840.840 kb on + strand, within ABZR88_RS15540at 3841.161 kb on - strand, within ABZR88_RS15540at 3841.190 kb on + strand, within ABZR88_RS15540at 3841.209 kb on - strand, within ABZR88_RS15540at 3841.233 kb on - strand, within ABZR88_RS15540at 3841.293 kb on - strand, within ABZR88_RS15540at 3841.339 kb on - strand, within ABZR88_RS15540at 3841.381 kb on - strand, within ABZR88_RS15540

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days
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3,838,433 + +0.4
3,838,485 - -0.2
3,838,498 + +1.0
3,838,508 + +0.7
3,838,532 + +0.1
3,838,542 + -0.2
3,838,542 + +0.1
3,838,687 + ABZR88_RS15530 0.27 +0.2
3,838,708 - ABZR88_RS15530 0.30 -0.4
3,838,809 + ABZR88_RS15530 0.45 +0.3
3,838,810 - ABZR88_RS15530 0.45 +0.5
3,838,980 - ABZR88_RS15530 0.70 -0.4
3,839,191 - -1.4
3,839,206 - -2.0
3,839,507 - +0.9
3,839,510 + ABZR88_RS15535 0.10 +2.9
3,839,620 + ABZR88_RS15535 0.21 +1.0
3,839,660 - ABZR88_RS15535 0.25 +0.8
3,839,689 - ABZR88_RS15535 0.28 -0.5
3,839,895 + ABZR88_RS15535 0.49 +0.7
3,839,896 - ABZR88_RS15535 0.49 +0.7
3,840,065 - ABZR88_RS15535 0.67 +1.0
3,840,361 + +1.7
3,840,362 - +1.0
3,840,424 + -2.1
3,840,428 + +0.4
3,840,521 - +0.2
3,840,539 - -0.1
3,840,633 + -0.1
3,840,769 + ABZR88_RS15540 0.17 -0.1
3,840,791 - ABZR88_RS15540 0.18 -0.1
3,840,791 - ABZR88_RS15540 0.18 +3.3
3,840,840 + ABZR88_RS15540 0.21 -0.0
3,841,161 - ABZR88_RS15540 0.41 +0.4
3,841,190 + ABZR88_RS15540 0.42 -0.1
3,841,209 - ABZR88_RS15540 0.44 -0.2
3,841,233 - ABZR88_RS15540 0.45 -0.1
3,841,293 - ABZR88_RS15540 0.49 +0.2
3,841,339 - ABZR88_RS15540 0.51 +0.7
3,841,381 - ABZR88_RS15540 0.54 +0.0

Or see this region's nucleotide sequence