Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15465

Experiment: D-Cellobiose (C); 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15460 and ABZR88_RS15465 are separated by 69 nucleotidesABZR88_RS15465 and ABZR88_RS15470 are separated by 245 nucleotidesABZR88_RS15470 and ABZR88_RS15475 are separated by 257 nucleotides ABZR88_RS15460: ABZR88_RS15460 - YpdA family putative bacillithiol disulfide reductase, at 3,826,825 to 3,827,781 _RS15460 ABZR88_RS15465: ABZR88_RS15465 - response regulator, at 3,827,851 to 3,828,219 _RS15465 ABZR88_RS15470: ABZR88_RS15470 - response regulator transcription factor, at 3,828,465 to 3,828,830 _RS15470 ABZR88_RS15475: ABZR88_RS15475 - helix-turn-helix domain-containing protein, at 3,829,088 to 3,829,339 _RS15475 Position (kb) 3827 3828 3829Strain fitness (log2 ratio) -1 0 1 2at 3826.944 kb on + strand, within ABZR88_RS15460at 3827.026 kb on - strand, within ABZR88_RS15460at 3827.165 kb on - strand, within ABZR88_RS15460at 3827.200 kb on + strand, within ABZR88_RS15460at 3827.201 kb on - strand, within ABZR88_RS15460at 3827.278 kb on + strand, within ABZR88_RS15460at 3827.304 kb on - strand, within ABZR88_RS15460at 3827.486 kb on + strand, within ABZR88_RS15460at 3827.506 kb on - strand, within ABZR88_RS15460at 3827.528 kb on + strand, within ABZR88_RS15460at 3827.771 kb on + strandat 3827.779 kb on + strandat 3827.822 kb on - strandat 3827.872 kb on - strandat 3828.047 kb on + strand, within ABZR88_RS15465at 3828.138 kb on + strand, within ABZR88_RS15465at 3828.138 kb on + strand, within ABZR88_RS15465at 3828.180 kb on + strand, within ABZR88_RS15465at 3828.339 kb on - strandat 3828.339 kb on - strandat 3828.587 kb on + strand, within ABZR88_RS15470at 3828.662 kb on + strand, within ABZR88_RS15470at 3828.745 kb on + strand, within ABZR88_RS15470at 3828.890 kb on + strandat 3828.957 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days
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3,826,944 + ABZR88_RS15460 0.12 -0.3
3,827,026 - ABZR88_RS15460 0.21 +0.6
3,827,165 - ABZR88_RS15460 0.36 -0.7
3,827,200 + ABZR88_RS15460 0.39 -0.6
3,827,201 - ABZR88_RS15460 0.39 -1.1
3,827,278 + ABZR88_RS15460 0.47 -1.1
3,827,304 - ABZR88_RS15460 0.50 -0.6
3,827,486 + ABZR88_RS15460 0.69 -0.1
3,827,506 - ABZR88_RS15460 0.71 +0.9
3,827,528 + ABZR88_RS15460 0.73 -0.8
3,827,771 + +0.4
3,827,779 + +0.6
3,827,822 - +0.6
3,827,872 - +2.5
3,828,047 + ABZR88_RS15465 0.53 +0.3
3,828,138 + ABZR88_RS15465 0.78 +0.9
3,828,138 + ABZR88_RS15465 0.78 +0.7
3,828,180 + ABZR88_RS15465 0.89 +0.6
3,828,339 - +0.8
3,828,339 - +0.4
3,828,587 + ABZR88_RS15470 0.33 -0.2
3,828,662 + ABZR88_RS15470 0.54 +1.3
3,828,745 + ABZR88_RS15470 0.77 -0.3
3,828,890 + -0.0
3,828,957 - +0.2

Or see this region's nucleotide sequence