Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12750

Experiment: D-Cellobiose (C); 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS12740 and ABZR88_RS12745 overlap by 11 nucleotidesABZR88_RS12745 and ABZR88_RS12750 overlap by 8 nucleotidesABZR88_RS12750 and ABZR88_RS12755 overlap by 8 nucleotides ABZR88_RS12740: ABZR88_RS12740 - HAD family hydrolase, at 3,130,916 to 3,131,560 _RS12740 ABZR88_RS12745: ABZR88_RS12745 - ATP-grasp domain-containing protein, at 3,131,550 to 3,132,518 _RS12745 ABZR88_RS12750: ABZR88_RS12750 - sugar transferase, at 3,132,511 to 3,133,122 _RS12750 ABZR88_RS12755: ABZR88_RS12755 - glycosyltransferase family 4 protein, at 3,133,115 to 3,134,323 _RS12755 Position (kb) 3132 3133 3134Strain fitness (log2 ratio) -1 0 1 2at 3131.521 kb on + strandat 3131.543 kb on + strandat 3131.544 kb on - strandat 3131.544 kb on - strandat 3131.573 kb on + strandat 3131.650 kb on + strand, within ABZR88_RS12745at 3131.697 kb on + strand, within ABZR88_RS12745at 3131.781 kb on + strand, within ABZR88_RS12745at 3131.807 kb on - strand, within ABZR88_RS12745at 3131.973 kb on + strand, within ABZR88_RS12745at 3131.977 kb on + strand, within ABZR88_RS12745at 3132.207 kb on + strand, within ABZR88_RS12745at 3132.407 kb on + strand, within ABZR88_RS12745at 3132.509 kb on + strandat 3132.567 kb on + strandat 3132.567 kb on + strandat 3132.598 kb on - strand, within ABZR88_RS12750at 3132.644 kb on + strand, within ABZR88_RS12750at 3132.687 kb on + strand, within ABZR88_RS12750at 3132.758 kb on + strand, within ABZR88_RS12750at 3132.829 kb on + strand, within ABZR88_RS12750at 3133.087 kb on + strandat 3133.089 kb on + strandat 3133.168 kb on - strandat 3133.324 kb on + strand, within ABZR88_RS12755at 3133.328 kb on - strand, within ABZR88_RS12755at 3133.393 kb on + strand, within ABZR88_RS12755at 3133.446 kb on - strand, within ABZR88_RS12755at 3133.554 kb on - strand, within ABZR88_RS12755at 3133.556 kb on + strand, within ABZR88_RS12755at 3133.634 kb on + strand, within ABZR88_RS12755at 3133.649 kb on + strand, within ABZR88_RS12755at 3133.649 kb on + strand, within ABZR88_RS12755at 3133.691 kb on - strand, within ABZR88_RS12755at 3133.693 kb on + strand, within ABZR88_RS12755at 3133.786 kb on - strand, within ABZR88_RS12755at 3133.827 kb on + strand, within ABZR88_RS12755at 3133.835 kb on + strand, within ABZR88_RS12755at 3133.944 kb on - strand, within ABZR88_RS12755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days
remove
3,131,521 + +2.5
3,131,543 + +0.2
3,131,544 - -0.1
3,131,544 - +0.7
3,131,573 + +0.5
3,131,650 + ABZR88_RS12745 0.10 +0.2
3,131,697 + ABZR88_RS12745 0.15 +0.7
3,131,781 + ABZR88_RS12745 0.24 +0.1
3,131,807 - ABZR88_RS12745 0.27 +0.3
3,131,973 + ABZR88_RS12745 0.44 +2.0
3,131,977 + ABZR88_RS12745 0.44 +0.5
3,132,207 + ABZR88_RS12745 0.68 +1.8
3,132,407 + ABZR88_RS12745 0.88 -0.3
3,132,509 + +0.8
3,132,567 + +0.4
3,132,567 + +0.1
3,132,598 - ABZR88_RS12750 0.14 +0.7
3,132,644 + ABZR88_RS12750 0.22 +1.9
3,132,687 + ABZR88_RS12750 0.29 +0.9
3,132,758 + ABZR88_RS12750 0.40 +0.5
3,132,829 + ABZR88_RS12750 0.52 +0.6
3,133,087 + -0.1
3,133,089 + +0.4
3,133,168 - +2.1
3,133,324 + ABZR88_RS12755 0.17 +1.4
3,133,328 - ABZR88_RS12755 0.18 +1.1
3,133,393 + ABZR88_RS12755 0.23 +0.8
3,133,446 - ABZR88_RS12755 0.27 +1.3
3,133,554 - ABZR88_RS12755 0.36 +1.2
3,133,556 + ABZR88_RS12755 0.36 +1.0
3,133,634 + ABZR88_RS12755 0.43 +1.0
3,133,649 + ABZR88_RS12755 0.44 +0.8
3,133,649 + ABZR88_RS12755 0.44 +1.1
3,133,691 - ABZR88_RS12755 0.48 +1.0
3,133,693 + ABZR88_RS12755 0.48 +0.9
3,133,786 - ABZR88_RS12755 0.56 +0.6
3,133,827 + ABZR88_RS12755 0.59 +1.2
3,133,835 + ABZR88_RS12755 0.60 +1.1
3,133,944 - ABZR88_RS12755 0.69 +1.0

Or see this region's nucleotide sequence