Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06815

Experiment: D-Cellobiose (C); 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06805 and ABZR88_RS06810 are separated by 96 nucleotidesABZR88_RS06810 and ABZR88_RS06815 are separated by 102 nucleotidesABZR88_RS06815 and ABZR88_RS06820 are separated by 192 nucleotidesABZR88_RS06820 and ABZR88_RS06825 are separated by 6 nucleotides ABZR88_RS06805: ABZR88_RS06805 - C40 family peptidase, at 1,668,433 to 1,669,194 _RS06805 ABZR88_RS06810: ABZR88_RS06810 - 4Fe-4S dicluster domain-containing protein, at 1,669,291 to 1,669,644 _RS06810 ABZR88_RS06815: ABZR88_RS06815 - acyl-CoA reductase, at 1,669,747 to 1,670,772 _RS06815 ABZR88_RS06820: ABZR88_RS06820 - fructose-6-phosphate aldolase, at 1,670,965 to 1,671,168 _RS06820 ABZR88_RS06825: ABZR88_RS06825 - cell division ATP-binding protein FtsE, at 1,671,175 to 1,671,855 _RS06825 Position (kb) 1669 1670 1671Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1668.796 kb on - strand, within ABZR88_RS06805at 1668.855 kb on + strand, within ABZR88_RS06805at 1668.905 kb on + strand, within ABZR88_RS06805at 1668.907 kb on + strand, within ABZR88_RS06805at 1668.957 kb on + strand, within ABZR88_RS06805at 1668.990 kb on - strand, within ABZR88_RS06805at 1669.215 kb on - strandat 1669.218 kb on - strandat 1669.687 kb on - strandat 1669.774 kb on - strandat 1669.853 kb on + strand, within ABZR88_RS06815at 1669.905 kb on - strand, within ABZR88_RS06815at 1670.104 kb on + strand, within ABZR88_RS06815at 1670.212 kb on - strand, within ABZR88_RS06815at 1670.369 kb on + strand, within ABZR88_RS06815at 1670.434 kb on - strand, within ABZR88_RS06815at 1670.466 kb on + strand, within ABZR88_RS06815at 1670.642 kb on + strand, within ABZR88_RS06815at 1670.845 kb on - strandat 1670.870 kb on + strandat 1670.880 kb on + strandat 1670.939 kb on + strandat 1670.961 kb on - strandat 1671.187 kb on - strandat 1671.195 kb on - strandat 1671.259 kb on - strand, within ABZR88_RS06825at 1671.265 kb on - strand, within ABZR88_RS06825at 1671.312 kb on + strand, within ABZR88_RS06825at 1671.407 kb on + strand, within ABZR88_RS06825at 1671.495 kb on - strand, within ABZR88_RS06825at 1671.541 kb on - strand, within ABZR88_RS06825at 1671.719 kb on + strand, within ABZR88_RS06825at 1671.719 kb on + strand, within ABZR88_RS06825

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); 3 days
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1,668,796 - ABZR88_RS06805 0.48 +1.8
1,668,855 + ABZR88_RS06805 0.55 +3.0
1,668,905 + ABZR88_RS06805 0.62 +1.5
1,668,907 + ABZR88_RS06805 0.62 +1.4
1,668,957 + ABZR88_RS06805 0.69 +1.2
1,668,990 - ABZR88_RS06805 0.73 +2.5
1,669,215 - -1.3
1,669,218 - -0.3
1,669,687 - -0.0
1,669,774 - +0.4
1,669,853 + ABZR88_RS06815 0.10 +1.1
1,669,905 - ABZR88_RS06815 0.15 +1.8
1,670,104 + ABZR88_RS06815 0.35 +0.9
1,670,212 - ABZR88_RS06815 0.45 +0.9
1,670,369 + ABZR88_RS06815 0.61 +1.0
1,670,434 - ABZR88_RS06815 0.67 +1.4
1,670,466 + ABZR88_RS06815 0.70 +0.8
1,670,642 + ABZR88_RS06815 0.87 +1.9
1,670,845 - +0.1
1,670,870 + +1.2
1,670,880 + -0.0
1,670,939 + -0.1
1,670,961 - -1.9
1,671,187 - -1.1
1,671,195 - +0.2
1,671,259 - ABZR88_RS06825 0.12 -1.4
1,671,265 - ABZR88_RS06825 0.13 -1.7
1,671,312 + ABZR88_RS06825 0.20 -1.4
1,671,407 + ABZR88_RS06825 0.34 -1.5
1,671,495 - ABZR88_RS06825 0.47 -0.6
1,671,541 - ABZR88_RS06825 0.54 +0.4
1,671,719 + ABZR88_RS06825 0.80 -2.6
1,671,719 + ABZR88_RS06825 0.80 -1.2

Or see this region's nucleotide sequence