Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12225

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12220 and ABZR88_RS12225 are separated by 160 nucleotidesABZR88_RS12225 and ABZR88_RS12230 are separated by 42 nucleotidesABZR88_RS12230 and ABZR88_RS12235 are separated by 19 nucleotidesABZR88_RS12235 and ABZR88_RS12240 are separated by 102 nucleotides ABZR88_RS12220: ABZR88_RS12220 - hypothetical protein, at 3,005,733 to 3,008,342 _RS12220 ABZR88_RS12225: ABZR88_RS12225 - ABC transporter ATP-binding protein, at 3,008,503 to 3,010,329 _RS12225 ABZR88_RS12230: ABZR88_RS12230 - hypothetical protein, at 3,010,372 to 3,010,626 _RS12230 ABZR88_RS12235: ABZR88_RS12235 - Crp/Fnr family transcriptional regulator, at 3,010,646 to 3,011,215 _RS12235 ABZR88_RS12240: ABZR88_RS12240 - SDR family NAD(P)-dependent oxidoreductase, at 3,011,318 to 3,012,055 _RS12240 Position (kb) 3008 3009 3010 3011Strain fitness (log2 ratio) -2 -1 0 1at 3007.595 kb on - strand, within ABZR88_RS12220at 3007.800 kb on - strand, within ABZR88_RS12220at 3007.800 kb on - strand, within ABZR88_RS12220at 3007.986 kb on + strand, within ABZR88_RS12220at 3008.030 kb on - strand, within ABZR88_RS12220at 3008.108 kb on - strandat 3008.209 kb on + strandat 3008.661 kb on - strandat 3008.663 kb on + strandat 3008.793 kb on - strand, within ABZR88_RS12225at 3008.806 kb on - strand, within ABZR88_RS12225at 3008.855 kb on + strand, within ABZR88_RS12225at 3008.855 kb on + strand, within ABZR88_RS12225at 3008.860 kb on - strand, within ABZR88_RS12225at 3008.862 kb on + strand, within ABZR88_RS12225at 3008.882 kb on + strand, within ABZR88_RS12225at 3009.004 kb on - strand, within ABZR88_RS12225at 3009.027 kb on - strand, within ABZR88_RS12225at 3009.072 kb on - strand, within ABZR88_RS12225at 3009.343 kb on + strand, within ABZR88_RS12225at 3009.493 kb on + strand, within ABZR88_RS12225at 3009.589 kb on - strand, within ABZR88_RS12225at 3009.740 kb on - strand, within ABZR88_RS12225at 3009.776 kb on - strand, within ABZR88_RS12225at 3010.057 kb on + strand, within ABZR88_RS12225at 3010.057 kb on + strand, within ABZR88_RS12225at 3010.096 kb on - strand, within ABZR88_RS12225at 3010.152 kb on - strandat 3010.172 kb on + strandat 3010.172 kb on + strandat 3010.173 kb on - strandat 3010.177 kb on - strandat 3010.328 kb on - strandat 3010.393 kb on + strandat 3010.508 kb on - strand, within ABZR88_RS12230at 3010.559 kb on - strand, within ABZR88_RS12230at 3010.609 kb on - strandat 3010.639 kb on - strandat 3010.660 kb on + strandat 3010.713 kb on + strand, within ABZR88_RS12235at 3010.850 kb on - strand, within ABZR88_RS12235at 3011.047 kb on + strand, within ABZR88_RS12235at 3011.047 kb on + strand, within ABZR88_RS12235at 3011.251 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,007,595 - ABZR88_RS12220 0.71 -1.0
3,007,800 - ABZR88_RS12220 0.79 -0.2
3,007,800 - ABZR88_RS12220 0.79 -0.5
3,007,986 + ABZR88_RS12220 0.86 +0.0
3,008,030 - ABZR88_RS12220 0.88 -0.1
3,008,108 - -0.2
3,008,209 + +0.7
3,008,661 - -0.3
3,008,663 + +0.3
3,008,793 - ABZR88_RS12225 0.16 -0.4
3,008,806 - ABZR88_RS12225 0.17 +0.4
3,008,855 + ABZR88_RS12225 0.19 +0.1
3,008,855 + ABZR88_RS12225 0.19 -0.4
3,008,860 - ABZR88_RS12225 0.20 +0.0
3,008,862 + ABZR88_RS12225 0.20 -0.2
3,008,882 + ABZR88_RS12225 0.21 -1.2
3,009,004 - ABZR88_RS12225 0.27 -0.1
3,009,027 - ABZR88_RS12225 0.29 +0.4
3,009,072 - ABZR88_RS12225 0.31 -1.7
3,009,343 + ABZR88_RS12225 0.46 -1.0
3,009,493 + ABZR88_RS12225 0.54 -1.8
3,009,589 - ABZR88_RS12225 0.59 -0.1
3,009,740 - ABZR88_RS12225 0.68 -0.0
3,009,776 - ABZR88_RS12225 0.70 -0.4
3,010,057 + ABZR88_RS12225 0.85 +0.1
3,010,057 + ABZR88_RS12225 0.85 -0.0
3,010,096 - ABZR88_RS12225 0.87 -0.1
3,010,152 - -0.3
3,010,172 + -0.1
3,010,172 + +0.4
3,010,173 - -1.1
3,010,177 - +0.9
3,010,328 - -0.9
3,010,393 + -0.4
3,010,508 - ABZR88_RS12230 0.53 -0.7
3,010,559 - ABZR88_RS12230 0.73 +1.2
3,010,609 - +0.1
3,010,639 - +0.7
3,010,660 + +0.1
3,010,713 + ABZR88_RS12235 0.12 +1.6
3,010,850 - ABZR88_RS12235 0.36 +0.9
3,011,047 + ABZR88_RS12235 0.70 +0.4
3,011,047 + ABZR88_RS12235 0.70 +0.1
3,011,251 + +1.5

Or see this region's nucleotide sequence