Strain Fitness in Bosea sp. OAE506 around ABIE41_RS23660

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS23655 and ABIE41_RS23660 are separated by 8 nucleotidesABIE41_RS23660 and ABIE41_RS23665 are separated by 37 nucleotides ABIE41_RS23655: ABIE41_RS23655 - urocanate hydratase, at 4,874,656 to 4,876,326 _RS23655 ABIE41_RS23660: ABIE41_RS23660 - flavin oxidoreductase, at 4,876,335 to 4,877,483 _RS23660 ABIE41_RS23665: ABIE41_RS23665 - TRAP transporter large permease, at 4,877,521 to 4,878,927 _RS23665 Position (kb) 4876 4877 4878Strain fitness (log2 ratio) -2 -1 0 1at 4875.470 kb on - strand, within ABIE41_RS23655at 4875.617 kb on - strand, within ABIE41_RS23655at 4875.694 kb on + strand, within ABIE41_RS23655at 4875.694 kb on + strand, within ABIE41_RS23655at 4875.694 kb on + strand, within ABIE41_RS23655at 4875.694 kb on + strand, within ABIE41_RS23655at 4875.694 kb on + strand, within ABIE41_RS23655at 4875.695 kb on - strand, within ABIE41_RS23655at 4875.697 kb on - strand, within ABIE41_RS23655at 4875.769 kb on + strand, within ABIE41_RS23655at 4875.769 kb on + strand, within ABIE41_RS23655at 4875.769 kb on + strand, within ABIE41_RS23655at 4875.769 kb on + strand, within ABIE41_RS23655at 4875.769 kb on + strand, within ABIE41_RS23655at 4875.770 kb on - strand, within ABIE41_RS23655at 4876.141 kb on + strand, within ABIE41_RS23655at 4876.319 kb on + strandat 4876.319 kb on + strandat 4876.319 kb on + strandat 4876.320 kb on - strandat 4876.320 kb on - strandat 4876.482 kb on + strand, within ABIE41_RS23660at 4876.482 kb on + strand, within ABIE41_RS23660at 4876.675 kb on + strand, within ABIE41_RS23660at 4876.676 kb on - strand, within ABIE41_RS23660at 4876.676 kb on - strand, within ABIE41_RS23660at 4876.735 kb on + strand, within ABIE41_RS23660at 4876.735 kb on + strand, within ABIE41_RS23660at 4876.735 kb on + strand, within ABIE41_RS23660at 4876.736 kb on - strand, within ABIE41_RS23660at 4876.736 kb on - strand, within ABIE41_RS23660at 4876.736 kb on - strand, within ABIE41_RS23660at 4876.792 kb on + strand, within ABIE41_RS23660at 4876.792 kb on + strand, within ABIE41_RS23660at 4876.969 kb on + strand, within ABIE41_RS23660at 4876.969 kb on + strand, within ABIE41_RS23660at 4876.970 kb on - strand, within ABIE41_RS23660at 4877.180 kb on - strand, within ABIE41_RS23660at 4877.180 kb on - strand, within ABIE41_RS23660at 4877.180 kb on - strand, within ABIE41_RS23660at 4877.180 kb on - strand, within ABIE41_RS23660at 4877.302 kb on + strand, within ABIE41_RS23660at 4877.302 kb on + strand, within ABIE41_RS23660at 4877.303 kb on - strand, within ABIE41_RS23660at 4877.303 kb on - strand, within ABIE41_RS23660at 4878.176 kb on + strand, within ABIE41_RS23665at 4878.179 kb on + strand, within ABIE41_RS23665at 4878.179 kb on + strand, within ABIE41_RS23665at 4878.180 kb on - strand, within ABIE41_RS23665at 4878.225 kb on + strand, within ABIE41_RS23665at 4878.226 kb on - strand, within ABIE41_RS23665at 4878.254 kb on + strand, within ABIE41_RS23665at 4878.254 kb on + strand, within ABIE41_RS23665at 4878.254 kb on + strand, within ABIE41_RS23665at 4878.254 kb on + strand, within ABIE41_RS23665at 4878.255 kb on - strand, within ABIE41_RS23665at 4878.255 kb on - strand, within ABIE41_RS23665at 4878.255 kb on - strand, within ABIE41_RS23665at 4878.347 kb on + strand, within ABIE41_RS23665at 4878.347 kb on + strand, within ABIE41_RS23665at 4878.347 kb on + strand, within ABIE41_RS23665at 4878.348 kb on - strand, within ABIE41_RS23665at 4878.348 kb on - strand, within ABIE41_RS23665

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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4,875,470 - ABIE41_RS23655 0.49 -0.5
4,875,617 - ABIE41_RS23655 0.58 -0.4
4,875,694 + ABIE41_RS23655 0.62 -0.3
4,875,694 + ABIE41_RS23655 0.62 +0.1
4,875,694 + ABIE41_RS23655 0.62 -1.3
4,875,694 + ABIE41_RS23655 0.62 -0.8
4,875,694 + ABIE41_RS23655 0.62 -2.1
4,875,695 - ABIE41_RS23655 0.62 -0.4
4,875,697 - ABIE41_RS23655 0.62 -0.8
4,875,769 + ABIE41_RS23655 0.67 -0.3
4,875,769 + ABIE41_RS23655 0.67 -0.4
4,875,769 + ABIE41_RS23655 0.67 -0.7
4,875,769 + ABIE41_RS23655 0.67 -1.2
4,875,769 + ABIE41_RS23655 0.67 -0.6
4,875,770 - ABIE41_RS23655 0.67 -1.5
4,876,141 + ABIE41_RS23655 0.89 -0.7
4,876,319 + +1.4
4,876,319 + -0.5
4,876,319 + -0.2
4,876,320 - -0.4
4,876,320 - -0.3
4,876,482 + ABIE41_RS23660 0.13 +0.1
4,876,482 + ABIE41_RS23660 0.13 -0.1
4,876,675 + ABIE41_RS23660 0.30 +0.5
4,876,676 - ABIE41_RS23660 0.30 -0.7
4,876,676 - ABIE41_RS23660 0.30 -0.1
4,876,735 + ABIE41_RS23660 0.35 +0.7
4,876,735 + ABIE41_RS23660 0.35 -0.2
4,876,735 + ABIE41_RS23660 0.35 -0.4
4,876,736 - ABIE41_RS23660 0.35 -0.3
4,876,736 - ABIE41_RS23660 0.35 -0.0
4,876,736 - ABIE41_RS23660 0.35 -0.1
4,876,792 + ABIE41_RS23660 0.40 +0.1
4,876,792 + ABIE41_RS23660 0.40 +0.4
4,876,969 + ABIE41_RS23660 0.55 -0.4
4,876,969 + ABIE41_RS23660 0.55 +0.7
4,876,970 - ABIE41_RS23660 0.55 -0.0
4,877,180 - ABIE41_RS23660 0.74 -0.8
4,877,180 - ABIE41_RS23660 0.74 -1.1
4,877,180 - ABIE41_RS23660 0.74 +1.1
4,877,180 - ABIE41_RS23660 0.74 +0.6
4,877,302 + ABIE41_RS23660 0.84 -0.3
4,877,302 + ABIE41_RS23660 0.84 +0.1
4,877,303 - ABIE41_RS23660 0.84 -0.8
4,877,303 - ABIE41_RS23660 0.84 -0.5
4,878,176 + ABIE41_RS23665 0.47 +0.2
4,878,179 + ABIE41_RS23665 0.47 +0.8
4,878,179 + ABIE41_RS23665 0.47 -0.1
4,878,180 - ABIE41_RS23665 0.47 +0.2
4,878,225 + ABIE41_RS23665 0.50 -0.2
4,878,226 - ABIE41_RS23665 0.50 +0.6
4,878,254 + ABIE41_RS23665 0.52 +0.6
4,878,254 + ABIE41_RS23665 0.52 +1.1
4,878,254 + ABIE41_RS23665 0.52 +1.1
4,878,254 + ABIE41_RS23665 0.52 +0.2
4,878,255 - ABIE41_RS23665 0.52 -0.0
4,878,255 - ABIE41_RS23665 0.52 -0.1
4,878,255 - ABIE41_RS23665 0.52 +0.1
4,878,347 + ABIE41_RS23665 0.59 -1.3
4,878,347 + ABIE41_RS23665 0.59 +1.1
4,878,347 + ABIE41_RS23665 0.59 -0.5
4,878,348 - ABIE41_RS23665 0.59 +0.0
4,878,348 - ABIE41_RS23665 0.59 +1.6

Or see this region's nucleotide sequence