Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20830 and ABIE41_RS20835 are separated by 63 nucleotides ABIE41_RS20835 and ABIE41_RS20840 are separated by 6 nucleotides ABIE41_RS20840 and ABIE41_RS20845 are separated by 91 nucleotides
ABIE41_RS20830: ABIE41_RS20830 - phosphatidylserine decarboxylase, at 4,282,103 to 4,282,915
_RS20830
ABIE41_RS20835: ABIE41_RS20835 - cytochrome P450, at 4,282,979 to 4,284,343
_RS20835
ABIE41_RS20840: ABIE41_RS20840 - hypothetical protein, at 4,284,350 to 4,284,838
_RS20840
ABIE41_RS20845: ABIE41_RS20845 - ABC transporter ATP-binding protein/permease, at 4,284,930 to 4,286,843
_RS20845
Position (kb) 4282
4283
4284
4285 Strain fitness (log2 ratio) -2
-1
0
1 at 4282.963 kb on + strand at 4283.103 kb on - strand at 4283.103 kb on - strand at 4283.150 kb on + strand, within ABIE41_RS20835 at 4283.150 kb on + strand, within ABIE41_RS20835 at 4283.150 kb on + strand, within ABIE41_RS20835 at 4283.151 kb on - strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.535 kb on - strand, within ABIE41_RS20835 at 4283.546 kb on + strand, within ABIE41_RS20835 at 4283.546 kb on + strand, within ABIE41_RS20835 at 4283.547 kb on - strand, within ABIE41_RS20835 at 4283.547 kb on - strand, within ABIE41_RS20835 at 4283.615 kb on + strand, within ABIE41_RS20835 at 4283.616 kb on - strand, within ABIE41_RS20835 at 4283.616 kb on - strand, within ABIE41_RS20835 at 4283.905 kb on + strand, within ABIE41_RS20835 at 4283.958 kb on - strand, within ABIE41_RS20835 at 4283.958 kb on - strand, within ABIE41_RS20835 at 4284.041 kb on + strand, within ABIE41_RS20835 at 4284.041 kb on + strand, within ABIE41_RS20835 at 4284.041 kb on + strand, within ABIE41_RS20835 at 4284.042 kb on - strand, within ABIE41_RS20835 at 4284.042 kb on - strand, within ABIE41_RS20835 at 4284.042 kb on - strand, within ABIE41_RS20835 at 4284.078 kb on + strand, within ABIE41_RS20835 at 4284.079 kb on - strand, within ABIE41_RS20835 at 4284.079 kb on - strand, within ABIE41_RS20835 at 4284.079 kb on - strand, within ABIE41_RS20835 at 4284.147 kb on - strand, within ABIE41_RS20835 at 4284.147 kb on - strand, within ABIE41_RS20835 at 4284.152 kb on + strand, within ABIE41_RS20835 at 4284.153 kb on - strand, within ABIE41_RS20835 at 4284.153 kb on - strand, within ABIE41_RS20835 at 4284.153 kb on - strand, within ABIE41_RS20835 at 4284.153 kb on - strand, within ABIE41_RS20835 at 4284.367 kb on - strand at 4284.528 kb on + strand, within ABIE41_RS20840 at 4284.528 kb on + strand, within ABIE41_RS20840 at 4284.529 kb on - strand, within ABIE41_RS20840 at 4284.529 kb on - strand, within ABIE41_RS20840 at 4284.547 kb on + strand, within ABIE41_RS20840 at 4284.555 kb on + strand, within ABIE41_RS20840 at 4284.556 kb on - strand, within ABIE41_RS20840 at 4284.556 kb on - strand, within ABIE41_RS20840 at 4284.556 kb on - strand, within ABIE41_RS20840 at 4284.556 kb on - strand, within ABIE41_RS20840 at 4285.036 kb on + strand at 4285.036 kb on + strand at 4285.037 kb on - strand at 4285.037 kb on - strand at 4285.343 kb on - strand, within ABIE41_RS20845
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 4,282,963 + -0.5 4,283,103 - -0.2 4,283,103 - +0.4 4,283,150 + ABIE41_RS20835 0.13 +0.8 4,283,150 + ABIE41_RS20835 0.13 -0.6 4,283,150 + ABIE41_RS20835 0.13 -0.8 4,283,151 - ABIE41_RS20835 0.13 -0.9 4,283,534 + ABIE41_RS20835 0.41 -1.0 4,283,534 + ABIE41_RS20835 0.41 +0.4 4,283,534 + ABIE41_RS20835 0.41 +0.2 4,283,534 + ABIE41_RS20835 0.41 +0.1 4,283,534 + ABIE41_RS20835 0.41 +0.4 4,283,534 + ABIE41_RS20835 0.41 +0.2 4,283,534 + ABIE41_RS20835 0.41 +0.2 4,283,535 - ABIE41_RS20835 0.41 +0.0 4,283,546 + ABIE41_RS20835 0.42 +0.5 4,283,546 + ABIE41_RS20835 0.42 +0.1 4,283,547 - ABIE41_RS20835 0.42 -0.0 4,283,547 - ABIE41_RS20835 0.42 +0.2 4,283,615 + ABIE41_RS20835 0.47 -0.1 4,283,616 - ABIE41_RS20835 0.47 +0.1 4,283,616 - ABIE41_RS20835 0.47 +0.3 4,283,905 + ABIE41_RS20835 0.68 +0.6 4,283,958 - ABIE41_RS20835 0.72 +0.5 4,283,958 - ABIE41_RS20835 0.72 +0.4 4,284,041 + ABIE41_RS20835 0.78 -0.0 4,284,041 + ABIE41_RS20835 0.78 -0.1 4,284,041 + ABIE41_RS20835 0.78 +0.4 4,284,042 - ABIE41_RS20835 0.78 +0.0 4,284,042 - ABIE41_RS20835 0.78 -0.7 4,284,042 - ABIE41_RS20835 0.78 -0.3 4,284,078 + ABIE41_RS20835 0.81 -0.1 4,284,079 - ABIE41_RS20835 0.81 +0.2 4,284,079 - ABIE41_RS20835 0.81 +0.2 4,284,079 - ABIE41_RS20835 0.81 -0.0 4,284,147 - ABIE41_RS20835 0.86 +0.2 4,284,147 - ABIE41_RS20835 0.86 +0.0 4,284,152 + ABIE41_RS20835 0.86 +0.3 4,284,153 - ABIE41_RS20835 0.86 -0.5 4,284,153 - ABIE41_RS20835 0.86 +0.4 4,284,153 - ABIE41_RS20835 0.86 -0.4 4,284,153 - ABIE41_RS20835 0.86 +0.1 4,284,367 - -0.7 4,284,528 + ABIE41_RS20840 0.36 +0.5 4,284,528 + ABIE41_RS20840 0.36 +0.1 4,284,529 - ABIE41_RS20840 0.37 -1.4 4,284,529 - ABIE41_RS20840 0.37 -0.5 4,284,547 + ABIE41_RS20840 0.40 +0.4 4,284,555 + ABIE41_RS20840 0.42 -0.2 4,284,556 - ABIE41_RS20840 0.42 +0.4 4,284,556 - ABIE41_RS20840 0.42 +0.4 4,284,556 - ABIE41_RS20840 0.42 +1.2 4,284,556 - ABIE41_RS20840 0.42 +0.5 4,285,036 + -0.9 4,285,036 + +0.5 4,285,037 - -0.2 4,285,037 - -2.0 4,285,343 - ABIE41_RS20845 0.22 +0.2
Or see this region's nucleotide sequence