Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20825 and ABIE41_RS20830 are separated by 161 nucleotides ABIE41_RS20830 and ABIE41_RS20835 are separated by 63 nucleotides
ABIE41_RS20825: ABIE41_RS20825 - phosphatidylcholine/phosphatidylserine synthase, at 4,281,093 to 4,281,941
_RS20825
ABIE41_RS20830: ABIE41_RS20830 - phosphatidylserine decarboxylase, at 4,282,103 to 4,282,915
_RS20830
ABIE41_RS20835: ABIE41_RS20835 - cytochrome P450, at 4,282,979 to 4,284,343
_RS20835
Position (kb) 4282
4283 Strain fitness (log2 ratio) -1
0
1 at 4281.931 kb on - strand at 4281.931 kb on - strand at 4282.963 kb on + strand at 4283.103 kb on - strand at 4283.103 kb on - strand at 4283.150 kb on + strand, within ABIE41_RS20835 at 4283.150 kb on + strand, within ABIE41_RS20835 at 4283.150 kb on + strand, within ABIE41_RS20835 at 4283.151 kb on - strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.534 kb on + strand, within ABIE41_RS20835 at 4283.535 kb on - strand, within ABIE41_RS20835 at 4283.546 kb on + strand, within ABIE41_RS20835 at 4283.546 kb on + strand, within ABIE41_RS20835 at 4283.547 kb on - strand, within ABIE41_RS20835 at 4283.547 kb on - strand, within ABIE41_RS20835 at 4283.615 kb on + strand, within ABIE41_RS20835 at 4283.616 kb on - strand, within ABIE41_RS20835 at 4283.616 kb on - strand, within ABIE41_RS20835 at 4283.905 kb on + strand, within ABIE41_RS20835
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 4,281,931 - -0.8 4,281,931 - -0.4 4,282,963 + -0.5 4,283,103 - -0.2 4,283,103 - +0.4 4,283,150 + ABIE41_RS20835 0.13 +0.8 4,283,150 + ABIE41_RS20835 0.13 -0.6 4,283,150 + ABIE41_RS20835 0.13 -0.8 4,283,151 - ABIE41_RS20835 0.13 -0.9 4,283,534 + ABIE41_RS20835 0.41 -1.0 4,283,534 + ABIE41_RS20835 0.41 +0.4 4,283,534 + ABIE41_RS20835 0.41 +0.2 4,283,534 + ABIE41_RS20835 0.41 +0.1 4,283,534 + ABIE41_RS20835 0.41 +0.4 4,283,534 + ABIE41_RS20835 0.41 +0.2 4,283,534 + ABIE41_RS20835 0.41 +0.2 4,283,535 - ABIE41_RS20835 0.41 +0.0 4,283,546 + ABIE41_RS20835 0.42 +0.5 4,283,546 + ABIE41_RS20835 0.42 +0.1 4,283,547 - ABIE41_RS20835 0.42 -0.0 4,283,547 - ABIE41_RS20835 0.42 +0.2 4,283,615 + ABIE41_RS20835 0.47 -0.1 4,283,616 - ABIE41_RS20835 0.47 +0.1 4,283,616 - ABIE41_RS20835 0.47 +0.3 4,283,905 + ABIE41_RS20835 0.68 +0.6
Or see this region's nucleotide sequence