Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS05450 and ABIE41_RS05455 are separated by 4 nucleotides ABIE41_RS05455 and ABIE41_RS05460 are separated by 246 nucleotides ABIE41_RS05460 and ABIE41_RS05465 are separated by 6 nucleotides ABIE41_RS05465 and ABIE41_RS05470 overlap by 4 nucleotides
ABIE41_RS05450: ABIE41_RS05450 - hypothetical protein, at 1,127,529 to 1,128,008
_RS05450
ABIE41_RS05455: ABIE41_RS05455 - rod-binding protein, at 1,128,013 to 1,128,645
_RS05455
ABIE41_RS05460: ABIE41_RS05460 - hypothetical protein, at 1,128,892 to 1,129,290
_RS05460
ABIE41_RS05465: ABIE41_RS05465 - flagellar biosynthesis protein FliR, at 1,129,297 to 1,130,049
_RS05465
ABIE41_RS05470: ABIE41_RS05470 - flagellar biosynthesis protein FlhA, at 1,130,046 to 1,132,157
_RS05470
Position (kb) 1128
1129
1130 Strain fitness (log2 ratio) -1
0
1
2 at 1129.364 kb on + strand at 1129.364 kb on + strand at 1129.364 kb on + strand at 1129.364 kb on + strand at 1129.365 kb on - strand at 1129.365 kb on - strand at 1129.413 kb on - strand, within ABIE41_RS05465 at 1129.413 kb on - strand, within ABIE41_RS05465 at 1129.475 kb on + strand, within ABIE41_RS05465 at 1129.475 kb on + strand, within ABIE41_RS05465 at 1129.475 kb on + strand, within ABIE41_RS05465 at 1129.475 kb on + strand, within ABIE41_RS05465 at 1129.475 kb on + strand, within ABIE41_RS05465 at 1129.475 kb on + strand, within ABIE41_RS05465 at 1129.475 kb on + strand, within ABIE41_RS05465 at 1129.475 kb on + strand, within ABIE41_RS05465 at 1129.476 kb on - strand, within ABIE41_RS05465 at 1129.476 kb on - strand, within ABIE41_RS05465 at 1129.476 kb on - strand, within ABIE41_RS05465 at 1129.476 kb on - strand, within ABIE41_RS05465 at 1129.476 kb on - strand, within ABIE41_RS05465 at 1129.476 kb on - strand, within ABIE41_RS05465 at 1129.592 kb on + strand, within ABIE41_RS05465 at 1129.592 kb on + strand, within ABIE41_RS05465 at 1129.593 kb on - strand, within ABIE41_RS05465 at 1129.892 kb on + strand, within ABIE41_RS05465 at 1129.892 kb on + strand, within ABIE41_RS05465 at 1129.892 kb on + strand, within ABIE41_RS05465 at 1129.892 kb on + strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1129.893 kb on - strand, within ABIE41_RS05465 at 1130.002 kb on + strand at 1130.057 kb on + strand at 1130.058 kb on - strand at 1130.149 kb on + strand at 1130.149 kb on + strand at 1130.150 kb on - strand at 1130.150 kb on - strand at 1130.150 kb on - strand at 1130.150 kb on - strand at 1130.150 kb on - strand at 1130.150 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 1,129,364 + -0.2 1,129,364 + -1.4 1,129,364 + -0.2 1,129,364 + +0.3 1,129,365 - +0.3 1,129,365 - +0.3 1,129,413 - ABIE41_RS05465 0.15 +0.0 1,129,413 - ABIE41_RS05465 0.15 +0.1 1,129,475 + ABIE41_RS05465 0.24 +1.7 1,129,475 + ABIE41_RS05465 0.24 -0.3 1,129,475 + ABIE41_RS05465 0.24 -0.3 1,129,475 + ABIE41_RS05465 0.24 +0.8 1,129,475 + ABIE41_RS05465 0.24 -0.8 1,129,475 + ABIE41_RS05465 0.24 -0.3 1,129,475 + ABIE41_RS05465 0.24 +0.5 1,129,475 + ABIE41_RS05465 0.24 +0.1 1,129,476 - ABIE41_RS05465 0.24 -0.3 1,129,476 - ABIE41_RS05465 0.24 +0.1 1,129,476 - ABIE41_RS05465 0.24 +0.5 1,129,476 - ABIE41_RS05465 0.24 -0.1 1,129,476 - ABIE41_RS05465 0.24 -0.6 1,129,476 - ABIE41_RS05465 0.24 -0.3 1,129,592 + ABIE41_RS05465 0.39 +0.4 1,129,592 + ABIE41_RS05465 0.39 -0.2 1,129,593 - ABIE41_RS05465 0.39 +0.6 1,129,892 + ABIE41_RS05465 0.79 +0.3 1,129,892 + ABIE41_RS05465 0.79 +0.3 1,129,892 + ABIE41_RS05465 0.79 +0.3 1,129,892 + ABIE41_RS05465 0.79 +1.4 1,129,893 - ABIE41_RS05465 0.79 -0.5 1,129,893 - ABIE41_RS05465 0.79 +0.2 1,129,893 - ABIE41_RS05465 0.79 +0.2 1,129,893 - ABIE41_RS05465 0.79 +0.1 1,129,893 - ABIE41_RS05465 0.79 +0.2 1,129,893 - ABIE41_RS05465 0.79 +0.3 1,129,893 - ABIE41_RS05465 0.79 -0.9 1,129,893 - ABIE41_RS05465 0.79 -0.2 1,129,893 - ABIE41_RS05465 0.79 -0.3 1,129,893 - ABIE41_RS05465 0.79 +0.8 1,129,893 - ABIE41_RS05465 0.79 -0.1 1,130,002 + +0.6 1,130,057 + +0.2 1,130,058 - -0.5 1,130,149 + -0.7 1,130,149 + +1.8 1,130,150 - -1.0 1,130,150 - +0.4 1,130,150 - -0.1 1,130,150 - +1.6 1,130,150 - -1.1 1,130,150 - +1.1
Or see this region's nucleotide sequence