Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05450

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05440 and ABIE41_RS05445 are separated by 129 nucleotidesABIE41_RS05445 and ABIE41_RS05450 overlap by 4 nucleotidesABIE41_RS05450 and ABIE41_RS05455 are separated by 4 nucleotidesABIE41_RS05455 and ABIE41_RS05460 are separated by 246 nucleotides ABIE41_RS05440: ABIE41_RS05440 - flagellar protein export ATPase FliI, at 1,125,625 to 1,126,947 _RS05440 ABIE41_RS05445: ABIE41_RS05445 - hypothetical protein, at 1,127,077 to 1,127,532 _RS05445 ABIE41_RS05450: ABIE41_RS05450 - hypothetical protein, at 1,127,529 to 1,128,008 _RS05450 ABIE41_RS05455: ABIE41_RS05455 - rod-binding protein, at 1,128,013 to 1,128,645 _RS05455 ABIE41_RS05460: ABIE41_RS05460 - hypothetical protein, at 1,128,892 to 1,129,290 _RS05460 Position (kb) 1127 1128 1129Strain fitness (log2 ratio) -1 0 1at 1126.867 kb on + strandat 1126.867 kb on + strandat 1126.867 kb on + strandat 1126.867 kb on + strandat 1126.867 kb on + strandat 1126.868 kb on - strandat 1126.868 kb on - strandat 1126.868 kb on - strandat 1126.964 kb on + strandat 1126.965 kb on - strandat 1127.105 kb on + strandat 1127.105 kb on + strandat 1127.105 kb on + strandat 1127.105 kb on + strandat 1127.105 kb on + strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.106 kb on - strandat 1127.240 kb on + strand, within ABIE41_RS05445at 1127.240 kb on + strand, within ABIE41_RS05445at 1127.241 kb on - strand, within ABIE41_RS05445at 1127.241 kb on - strand, within ABIE41_RS05445at 1127.241 kb on - strand, within ABIE41_RS05445at 1127.270 kb on + strand, within ABIE41_RS05445at 1127.270 kb on + strand, within ABIE41_RS05445at 1127.270 kb on + strand, within ABIE41_RS05445at 1127.270 kb on + strand, within ABIE41_RS05445at 1127.270 kb on + strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.271 kb on - strand, within ABIE41_RS05445at 1127.342 kb on + strand, within ABIE41_RS05445at 1127.342 kb on + strand, within ABIE41_RS05445at 1127.342 kb on + strand, within ABIE41_RS05445at 1127.342 kb on + strand, within ABIE41_RS05445at 1127.342 kb on + strand, within ABIE41_RS05445at 1127.343 kb on - strand, within ABIE41_RS05445at 1127.343 kb on - strand, within ABIE41_RS05445at 1127.343 kb on - strand, within ABIE41_RS05445at 1127.343 kb on - strand, within ABIE41_RS05445at 1127.399 kb on + strand, within ABIE41_RS05445at 1127.399 kb on + strand, within ABIE41_RS05445at 1127.400 kb on - strand, within ABIE41_RS05445at 1127.400 kb on - strand, within ABIE41_RS05445at 1127.400 kb on - strand, within ABIE41_RS05445at 1127.584 kb on + strand, within ABIE41_RS05450at 1127.584 kb on + strand, within ABIE41_RS05450at 1127.584 kb on + strand, within ABIE41_RS05450at 1127.584 kb on + strand, within ABIE41_RS05450at 1127.584 kb on + strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450at 1127.585 kb on - strand, within ABIE41_RS05450

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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1,126,867 + +0.3
1,126,867 + +0.4
1,126,867 + -0.5
1,126,867 + -0.1
1,126,867 + -1.2
1,126,868 - +0.1
1,126,868 - -0.0
1,126,868 - -0.5
1,126,964 + +0.5
1,126,965 - +0.9
1,127,105 + +0.8
1,127,105 + +0.5
1,127,105 + +0.5
1,127,105 + +0.1
1,127,105 + -0.1
1,127,106 - -0.4
1,127,106 - +0.5
1,127,106 - +0.1
1,127,106 - -0.6
1,127,106 - -0.5
1,127,106 - -0.1
1,127,106 - +0.5
1,127,106 - +0.5
1,127,240 + ABIE41_RS05445 0.36 +0.6
1,127,240 + ABIE41_RS05445 0.36 +0.1
1,127,241 - ABIE41_RS05445 0.36 +0.2
1,127,241 - ABIE41_RS05445 0.36 +1.1
1,127,241 - ABIE41_RS05445 0.36 +0.2
1,127,270 + ABIE41_RS05445 0.42 +0.1
1,127,270 + ABIE41_RS05445 0.42 +0.2
1,127,270 + ABIE41_RS05445 0.42 +0.1
1,127,270 + ABIE41_RS05445 0.42 +0.7
1,127,270 + ABIE41_RS05445 0.42 -0.1
1,127,271 - ABIE41_RS05445 0.43 +0.3
1,127,271 - ABIE41_RS05445 0.43 -0.9
1,127,271 - ABIE41_RS05445 0.43 -0.2
1,127,271 - ABIE41_RS05445 0.43 +0.3
1,127,271 - ABIE41_RS05445 0.43 +0.1
1,127,271 - ABIE41_RS05445 0.43 +0.6
1,127,271 - ABIE41_RS05445 0.43 +0.1
1,127,271 - ABIE41_RS05445 0.43 +0.2
1,127,271 - ABIE41_RS05445 0.43 +0.6
1,127,342 + ABIE41_RS05445 0.58 +0.1
1,127,342 + ABIE41_RS05445 0.58 -0.9
1,127,342 + ABIE41_RS05445 0.58 -0.4
1,127,342 + ABIE41_RS05445 0.58 +0.1
1,127,342 + ABIE41_RS05445 0.58 +0.2
1,127,343 - ABIE41_RS05445 0.58 +0.7
1,127,343 - ABIE41_RS05445 0.58 +1.5
1,127,343 - ABIE41_RS05445 0.58 -0.1
1,127,343 - ABIE41_RS05445 0.58 +0.1
1,127,399 + ABIE41_RS05445 0.71 +0.5
1,127,399 + ABIE41_RS05445 0.71 +0.6
1,127,400 - ABIE41_RS05445 0.71 -0.0
1,127,400 - ABIE41_RS05445 0.71 -0.8
1,127,400 - ABIE41_RS05445 0.71 -0.1
1,127,584 + ABIE41_RS05450 0.11 -0.2
1,127,584 + ABIE41_RS05450 0.11 -1.7
1,127,584 + ABIE41_RS05450 0.11 +0.5
1,127,584 + ABIE41_RS05450 0.11 +0.3
1,127,584 + ABIE41_RS05450 0.11 +1.1
1,127,585 - ABIE41_RS05450 0.12 +1.1
1,127,585 - ABIE41_RS05450 0.12 +0.8
1,127,585 - ABIE41_RS05450 0.12 +0.2
1,127,585 - ABIE41_RS05450 0.12 -0.9
1,127,585 - ABIE41_RS05450 0.12 +0.6
1,127,585 - ABIE41_RS05450 0.12 +0.2
1,127,585 - ABIE41_RS05450 0.12 +0.1

Or see this region's nucleotide sequence