Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20755 and ABIE41_RS20760 are separated by 40 nucleotides ABIE41_RS20760 and ABIE41_RS20765 are separated by 26 nucleotides
ABIE41_RS20755: ABIE41_RS20755 - TRAP transporter substrate-binding protein, at 4,268,188 to 4,269,207
_RS20755
ABIE41_RS20760: ABIE41_RS20760 - glucose 1-dehydrogenase, at 4,269,248 to 4,270,033
_RS20760
ABIE41_RS20765: ABIE41_RS20765 - four-carbon acid sugar kinase family protein, at 4,270,060 to 4,271,430
_RS20765
Position (kb) 4269
4270
4271 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4268.261 kb on + strand at 4268.262 kb on - strand at 4268.262 kb on - strand at 4268.487 kb on + strand, within ABIE41_RS20755 at 4268.487 kb on + strand, within ABIE41_RS20755 at 4268.487 kb on + strand, within ABIE41_RS20755 at 4268.487 kb on + strand, within ABIE41_RS20755 at 4268.487 kb on + strand, within ABIE41_RS20755 at 4268.487 kb on + strand, within ABIE41_RS20755 at 4268.487 kb on + strand, within ABIE41_RS20755 at 4268.487 kb on + strand, within ABIE41_RS20755 at 4268.488 kb on - strand, within ABIE41_RS20755 at 4268.488 kb on - strand, within ABIE41_RS20755 at 4268.488 kb on - strand, within ABIE41_RS20755 at 4268.488 kb on - strand, within ABIE41_RS20755 at 4268.488 kb on - strand, within ABIE41_RS20755 at 4268.488 kb on - strand, within ABIE41_RS20755 at 4268.488 kb on - strand, within ABIE41_RS20755 at 4268.488 kb on - strand, within ABIE41_RS20755 at 4268.507 kb on + strand, within ABIE41_RS20755 at 4268.507 kb on + strand, within ABIE41_RS20755 at 4268.507 kb on + strand, within ABIE41_RS20755 at 4268.507 kb on + strand, within ABIE41_RS20755 at 4269.107 kb on + strand at 4269.108 kb on + strand at 4269.108 kb on + strand at 4269.108 kb on + strand at 4269.108 kb on + strand at 4269.108 kb on + strand at 4269.109 kb on - strand at 4269.109 kb on - strand at 4269.109 kb on - strand at 4269.109 kb on - strand at 4269.213 kb on + strand at 4269.213 kb on + strand at 4269.339 kb on + strand, within ABIE41_RS20760 at 4269.420 kb on + strand, within ABIE41_RS20760 at 4269.420 kb on + strand, within ABIE41_RS20760 at 4269.421 kb on - strand, within ABIE41_RS20760 at 4269.421 kb on - strand, within ABIE41_RS20760 at 4269.421 kb on - strand, within ABIE41_RS20760 at 4269.421 kb on - strand, within ABIE41_RS20760 at 4269.426 kb on + strand, within ABIE41_RS20760 at 4269.426 kb on + strand, within ABIE41_RS20760 at 4269.427 kb on - strand, within ABIE41_RS20760 at 4269.512 kb on + strand, within ABIE41_RS20760 at 4269.512 kb on + strand, within ABIE41_RS20760 at 4269.513 kb on + strand, within ABIE41_RS20760 at 4269.514 kb on - strand, within ABIE41_RS20760 at 4269.577 kb on - strand, within ABIE41_RS20760
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 4,268,261 + +0.9 4,268,262 - +0.0 4,268,262 - -0.2 4,268,487 + ABIE41_RS20755 0.29 -0.4 4,268,487 + ABIE41_RS20755 0.29 +0.1 4,268,487 + ABIE41_RS20755 0.29 -0.1 4,268,487 + ABIE41_RS20755 0.29 +0.1 4,268,487 + ABIE41_RS20755 0.29 +0.3 4,268,487 + ABIE41_RS20755 0.29 +0.9 4,268,487 + ABIE41_RS20755 0.29 -1.7 4,268,487 + ABIE41_RS20755 0.29 +1.3 4,268,488 - ABIE41_RS20755 0.29 -0.3 4,268,488 - ABIE41_RS20755 0.29 +0.2 4,268,488 - ABIE41_RS20755 0.29 +0.5 4,268,488 - ABIE41_RS20755 0.29 -1.9 4,268,488 - ABIE41_RS20755 0.29 +0.7 4,268,488 - ABIE41_RS20755 0.29 -0.1 4,268,488 - ABIE41_RS20755 0.29 -0.0 4,268,488 - ABIE41_RS20755 0.29 +3.7 4,268,507 + ABIE41_RS20755 0.31 -0.1 4,268,507 + ABIE41_RS20755 0.31 -0.7 4,268,507 + ABIE41_RS20755 0.31 -0.1 4,268,507 + ABIE41_RS20755 0.31 +0.0 4,269,107 + -1.9 4,269,108 + +0.1 4,269,108 + -1.4 4,269,108 + -1.7 4,269,108 + +0.7 4,269,108 + +0.1 4,269,109 - +0.2 4,269,109 - +0.3 4,269,109 - -0.1 4,269,109 - +0.1 4,269,213 + +1.6 4,269,213 + +0.1 4,269,339 + ABIE41_RS20760 0.12 -0.0 4,269,420 + ABIE41_RS20760 0.22 +0.4 4,269,420 + ABIE41_RS20760 0.22 -0.3 4,269,421 - ABIE41_RS20760 0.22 -0.1 4,269,421 - ABIE41_RS20760 0.22 -0.1 4,269,421 - ABIE41_RS20760 0.22 -0.1 4,269,421 - ABIE41_RS20760 0.22 -0.0 4,269,426 + ABIE41_RS20760 0.23 -0.1 4,269,426 + ABIE41_RS20760 0.23 +0.2 4,269,427 - ABIE41_RS20760 0.23 -0.7 4,269,512 + ABIE41_RS20760 0.34 +0.1 4,269,512 + ABIE41_RS20760 0.34 +0.4 4,269,513 + ABIE41_RS20760 0.34 +0.9 4,269,514 - ABIE41_RS20760 0.34 -1.9 4,269,577 - ABIE41_RS20760 0.42 -0.7
Or see this region's nucleotide sequence