Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18765

Experiment: Ying_AminoAcid20 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS18760 and ABIE41_RS18765 are separated by 13 nucleotidesABIE41_RS18765 and ABIE41_RS18770 are separated by 4 nucleotidesABIE41_RS18770 and ABIE41_RS18775 are separated by 1 nucleotides ABIE41_RS18760: ABIE41_RS18760 - flotillin family protein, at 3,863,624 to 3,866,530 _RS18760 ABIE41_RS18765: ABIE41_RS18765 - SRPBCC family protein, at 3,866,544 to 3,866,981 _RS18765 ABIE41_RS18770: ABIE41_RS18770 - SRPBCC family protein, at 3,866,986 to 3,867,438 _RS18770 ABIE41_RS18775: ABIE41_RS18775 - FAD binding domain-containing protein, at 3,867,440 to 3,868,261 _RS18775 Position (kb) 3866 3867Strain fitness (log2 ratio) -1 0 1 2at 3865.859 kb on + strand, within ABIE41_RS18760at 3865.860 kb on - strand, within ABIE41_RS18760at 3865.860 kb on - strand, within ABIE41_RS18760at 3865.860 kb on - strand, within ABIE41_RS18760at 3865.860 kb on - strand, within ABIE41_RS18760at 3866.087 kb on + strand, within ABIE41_RS18760at 3866.087 kb on + strand, within ABIE41_RS18760at 3866.087 kb on + strand, within ABIE41_RS18760at 3866.088 kb on - strand, within ABIE41_RS18760at 3866.088 kb on - strand, within ABIE41_RS18760at 3866.308 kb on - strandat 3866.381 kb on - strandat 3866.381 kb on - strandat 3866.381 kb on - strandat 3866.381 kb on - strandat 3866.556 kb on + strandat 3866.556 kb on + strandat 3866.680 kb on - strand, within ABIE41_RS18765at 3866.757 kb on + strand, within ABIE41_RS18765at 3866.776 kb on - strand, within ABIE41_RS18765at 3866.776 kb on - strand, within ABIE41_RS18765at 3866.776 kb on - strand, within ABIE41_RS18765at 3866.811 kb on + strand, within ABIE41_RS18765at 3866.811 kb on + strand, within ABIE41_RS18765at 3866.812 kb on - strand, within ABIE41_RS18765at 3866.812 kb on - strand, within ABIE41_RS18765at 3866.812 kb on - strand, within ABIE41_RS18765at 3866.812 kb on - strand, within ABIE41_RS18765at 3866.812 kb on - strand, within ABIE41_RS18765at 3866.812 kb on - strand, within ABIE41_RS18765at 3866.812 kb on - strand, within ABIE41_RS18765at 3866.812 kb on - strand, within ABIE41_RS18765at 3867.217 kb on + strand, within ABIE41_RS18770at 3867.218 kb on - strand, within ABIE41_RS18770at 3867.218 kb on - strand, within ABIE41_RS18770at 3867.218 kb on - strand, within ABIE41_RS18770at 3867.324 kb on + strand, within ABIE41_RS18770at 3867.325 kb on - strand, within ABIE41_RS18770at 3867.379 kb on + strand, within ABIE41_RS18770at 3867.379 kb on + strand, within ABIE41_RS18770at 3867.773 kb on + strand, within ABIE41_RS18775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
remove
3,865,859 + ABIE41_RS18760 0.77 -0.6
3,865,860 - ABIE41_RS18760 0.77 -0.1
3,865,860 - ABIE41_RS18760 0.77 +0.8
3,865,860 - ABIE41_RS18760 0.77 +0.8
3,865,860 - ABIE41_RS18760 0.77 -0.5
3,866,087 + ABIE41_RS18760 0.85 -1.6
3,866,087 + ABIE41_RS18760 0.85 -0.4
3,866,087 + ABIE41_RS18760 0.85 -0.0
3,866,088 - ABIE41_RS18760 0.85 -0.4
3,866,088 - ABIE41_RS18760 0.85 -0.7
3,866,308 - -0.2
3,866,381 - -0.0
3,866,381 - +0.9
3,866,381 - -0.5
3,866,381 - +0.1
3,866,556 + -0.0
3,866,556 + +0.4
3,866,680 - ABIE41_RS18765 0.31 +0.0
3,866,757 + ABIE41_RS18765 0.49 +0.1
3,866,776 - ABIE41_RS18765 0.53 -0.1
3,866,776 - ABIE41_RS18765 0.53 -0.9
3,866,776 - ABIE41_RS18765 0.53 +1.2
3,866,811 + ABIE41_RS18765 0.61 +0.9
3,866,811 + ABIE41_RS18765 0.61 +0.2
3,866,812 - ABIE41_RS18765 0.61 +0.4
3,866,812 - ABIE41_RS18765 0.61 -0.4
3,866,812 - ABIE41_RS18765 0.61 +0.9
3,866,812 - ABIE41_RS18765 0.61 +0.4
3,866,812 - ABIE41_RS18765 0.61 -0.1
3,866,812 - ABIE41_RS18765 0.61 +0.6
3,866,812 - ABIE41_RS18765 0.61 +0.3
3,866,812 - ABIE41_RS18765 0.61 +0.7
3,867,217 + ABIE41_RS18770 0.51 -0.4
3,867,218 - ABIE41_RS18770 0.51 +0.2
3,867,218 - ABIE41_RS18770 0.51 +0.0
3,867,218 - ABIE41_RS18770 0.51 +0.4
3,867,324 + ABIE41_RS18770 0.75 +0.3
3,867,325 - ABIE41_RS18770 0.75 +0.9
3,867,379 + ABIE41_RS18770 0.87 +0.1
3,867,379 + ABIE41_RS18770 0.87 -0.1
3,867,773 + ABIE41_RS18775 0.41 +2.3

Or see this region's nucleotide sequence