Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12435

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,544,717	+				-0.1
2,544,717	+				+0.7
2,544,717	+				+0.2
2,544,718	-				-1.4
2,544,718	-				+0.6
2,544,718	-				-0.2
2,544,718	-				+0.4
2,544,997	+		ABIE41_RS12430	0.33	+0.3
2,545,106	-		ABIE41_RS12430	0.44	-0.3
2,545,106	-		ABIE41_RS12430	0.44	-0.0
2,545,106	-		ABIE41_RS12430	0.44	-0.4
2,545,207	+		ABIE41_RS12430	0.55	+0.4
2,545,208	-		ABIE41_RS12430	0.55	-0.1
2,545,208	-		ABIE41_RS12430	0.55	+0.1
2,545,208	-		ABIE41_RS12430	0.55	+0.2
2,545,208	-		ABIE41_RS12430	0.55	+0.1
2,545,208	-		ABIE41_RS12430	0.55	+0.4
2,545,216	+		ABIE41_RS12430	0.56	+0.3
2,545,354	-		ABIE41_RS12430	0.70	+0.6
2,545,402	+		ABIE41_RS12430	0.75	+0.4
2,545,403	-		ABIE41_RS12430	0.75	-0.2
2,545,852	-		ABIE41_RS12435	0.17	-0.1
2,546,445	+		ABIE41_RS12435	0.67	-1.8
2,546,445	+		ABIE41_RS12435	0.67	-0.6
2,546,445	+		ABIE41_RS12435	0.67	+0.4
2,546,445	+		ABIE41_RS12435	0.67	-0.3
2,546,446	-		ABIE41_RS12435	0.67	-0.2
2,546,446	-		ABIE41_RS12435	0.67	+0.1
2,546,446	-		ABIE41_RS12435	0.67	-0.4
2,546,446	-		ABIE41_RS12435	0.67	-0.5
2,546,446	-		ABIE41_RS12435	0.67	-0.9
2,546,446	-		ABIE41_RS12435	0.67	+0.1
2,546,446	-		ABIE41_RS12435	0.67	-0.8
2,546,727	+				+0.1
2,546,728	-				+0.1
2,546,760	+				-0.6
2,546,761	-				-1.1
2,546,767	-				+0.1
2,546,933	+				-1.4
2,546,933	+				-0.9
2,546,933	+				+0.9
2,546,934	-				-0.3
2,546,934	-				-1.4
2,546,934	-				+0.5
2,547,103	+		ABIE41_RS12440	0.29	-0.1
2,547,103	+		ABIE41_RS12440	0.29	-1.1
2,547,104	-		ABIE41_RS12440	0.29	+0.1
2,547,104	-		ABIE41_RS12440	0.29	-0.1
2,547,199	+		ABIE41_RS12440	0.44	-0.9
2,547,200	-		ABIE41_RS12440	0.45	-0.8
2,547,200	-		ABIE41_RS12440	0.45	-0.7
2,547,325	+		ABIE41_RS12440	0.64	-1.3
2,547,326	-		ABIE41_RS12440	0.65	-0.2
2,547,379	+		ABIE41_RS12440	0.73	-0.8
2,547,380	-		ABIE41_RS12440	0.73	-0.6
2,547,497	-				-1.2
2,547,497	-				-1.0
2,547,654	+				-0.4
2,547,655	-				-2.4