Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12420

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,541,986	+				-0.3
2,541,987	-				-0.8
2,542,212	+		ABIE41_RS12415	0.26	-0.3
2,542,214	+		ABIE41_RS12415	0.26	+0.4
2,542,214	+		ABIE41_RS12415	0.26	+0.2
2,542,214	+		ABIE41_RS12415	0.26	+1.1
2,542,214	+		ABIE41_RS12415	0.26	+1.7
2,542,214	+		ABIE41_RS12415	0.26	-0.3
2,542,214	+		ABIE41_RS12415	0.26	+0.0
2,542,214	+		ABIE41_RS12415	0.26	-0.7
2,542,215	-		ABIE41_RS12415	0.26	+0.2
2,542,215	-		ABIE41_RS12415	0.26	+0.1
2,542,215	-		ABIE41_RS12415	0.26	+0.1
2,542,215	-		ABIE41_RS12415	0.26	+0.9
2,542,215	-		ABIE41_RS12415	0.26	+0.7
2,542,215	-		ABIE41_RS12415	0.26	+0.1
2,542,215	-		ABIE41_RS12415	0.26	+1.0
2,542,215	-		ABIE41_RS12415	0.26	-0.1
2,542,215	-		ABIE41_RS12415	0.26	+0.2
2,542,888	-				+0.0
2,542,897	+				-0.0
2,542,929	+				+0.0
2,542,930	-				+0.9
2,543,214	+		ABIE41_RS12420	0.18	-0.0
2,543,220	+		ABIE41_RS12420	0.18	-0.3
2,543,220	+		ABIE41_RS12420	0.18	-0.3
2,543,221	-		ABIE41_RS12420	0.18	-0.1
2,543,414	-		ABIE41_RS12420	0.33	+0.5
2,543,414	-		ABIE41_RS12420	0.33	-0.7
2,543,497	+		ABIE41_RS12420	0.39	+0.3
2,543,498	-		ABIE41_RS12420	0.39	-0.0
2,543,498	-		ABIE41_RS12420	0.39	-0.1
2,543,498	-		ABIE41_RS12420	0.39	+0.3
2,543,611	+		ABIE41_RS12420	0.47	-0.3
2,543,612	-		ABIE41_RS12420	0.48	+0.1
2,543,612	-		ABIE41_RS12420	0.48	+0.1
2,543,764	+		ABIE41_RS12420	0.59	-0.1
2,543,764	+		ABIE41_RS12420	0.59	-0.2
2,543,765	-		ABIE41_RS12420	0.59	-0.4
2,543,950	+		ABIE41_RS12420	0.73	+0.2
2,543,950	+		ABIE41_RS12420	0.73	-0.1
2,544,113	-		ABIE41_RS12420	0.85	+0.2
2,544,193	+				+0.4
2,544,194	-				-0.1
2,544,485	+		ABIE41_RS12425	0.54	+0.7
2,544,632	-				-0.2
2,544,717	+				-0.1
2,544,717	+				+0.7
2,544,717	+				+0.2
2,544,718	-				-1.4
2,544,718	-				+0.6
2,544,718	-				-0.2
2,544,718	-				+0.4
2,544,997	+		ABIE41_RS12430	0.33	+0.3
2,545,106	-		ABIE41_RS12430	0.44	-0.3
2,545,106	-		ABIE41_RS12430	0.44	-0.0
2,545,106	-		ABIE41_RS12430	0.44	-0.4
2,545,207	+		ABIE41_RS12430	0.55	+0.4
2,545,208	-		ABIE41_RS12430	0.55	-0.1
2,545,208	-		ABIE41_RS12430	0.55	+0.1
2,545,208	-		ABIE41_RS12430	0.55	+0.2
2,545,208	-		ABIE41_RS12430	0.55	+0.1
2,545,208	-		ABIE41_RS12430	0.55	+0.4
2,545,216	+		ABIE41_RS12430	0.56	+0.3