Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01950 and ABIE41_RS01955 are separated by 255 nucleotides ABIE41_RS01955 and ABIE41_RS01960 overlap by 17 nucleotides ABIE41_RS01960 and ABIE41_RS01965 are separated by 2 nucleotides ABIE41_RS01965 and ABIE41_RS01970 are separated by 67 nucleotides
ABIE41_RS01950: ABIE41_RS01950 - VOC family protein, at 392,427 to 393,209
_RS01950
ABIE41_RS01955: ABIE41_RS01955 - hypothetical protein, at 393,465 to 394,226
_RS01955
ABIE41_RS01960: ABIE41_RS01960 - hypothetical protein, at 394,210 to 394,659
_RS01960
ABIE41_RS01965: ABIE41_RS01965 - hypothetical protein, at 394,662 to 395,129
_RS01965
ABIE41_RS01970: ABIE41_RS01970 - hypothetical protein, at 395,197 to 396,021
_RS01970
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1 at 392.942 kb on + strand, within ABIE41_RS01950 at 392.943 kb on - strand, within ABIE41_RS01950 at 393.058 kb on + strand, within ABIE41_RS01950 at 393.143 kb on + strand at 393.143 kb on + strand at 393.143 kb on + strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.145 kb on + strand at 393.145 kb on + strand at 393.146 kb on - strand at 393.146 kb on - strand at 393.188 kb on + strand at 393.189 kb on - strand at 393.189 kb on - strand at 393.189 kb on - strand at 393.189 kb on - strand at 393.379 kb on - strand at 393.395 kb on - strand at 393.399 kb on - strand at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 392,942 + ABIE41_RS01950 0.66 -0.1 392,943 - ABIE41_RS01950 0.66 -1.4 393,058 + ABIE41_RS01950 0.81 -0.1 393,143 + -0.4 393,143 + +0.7 393,143 + -0.6 393,144 - +0.4 393,144 - +0.9 393,144 - -0.5 393,144 - -0.5 393,144 - +0.2 393,144 - -0.9 393,145 + +0.9 393,145 + +0.2 393,146 - +0.1 393,146 - +0.3 393,188 + -0.8 393,189 - -0.2 393,189 - +0.1 393,189 - -0.1 393,189 - -1.1 393,379 - +0.1 393,395 - -0.2 393,399 - -0.3 395,076 + ABIE41_RS01965 0.88 -0.3 395,076 + ABIE41_RS01965 0.88 +0.2 395,076 + ABIE41_RS01965 0.88 -0.1 395,076 + ABIE41_RS01965 0.88 +0.4 395,076 + ABIE41_RS01965 0.88 -0.2 395,077 - ABIE41_RS01965 0.89 -0.1 395,077 - ABIE41_RS01965 0.89 +0.1 395,077 - ABIE41_RS01965 0.89 -0.3 395,077 - ABIE41_RS01965 0.89 +0.9 395,077 - ABIE41_RS01965 0.89 -0.1 395,078 + ABIE41_RS01965 0.89 -0.3 395,078 + ABIE41_RS01965 0.89 -2.0 395,078 + ABIE41_RS01965 0.89 -0.3 395,078 + ABIE41_RS01965 0.89 +0.3 395,078 + ABIE41_RS01965 0.89 -0.4 395,078 + ABIE41_RS01965 0.89 +0.3 395,078 + ABIE41_RS01965 0.89 +1.3 395,079 - ABIE41_RS01965 0.89 +0.4 395,079 - ABIE41_RS01965 0.89 +0.2 395,079 - ABIE41_RS01965 0.89 +0.4 395,079 - ABIE41_RS01965 0.89 +0.5 395,079 - ABIE41_RS01965 0.89 -0.6 395,079 - ABIE41_RS01965 0.89 +1.7 395,079 - ABIE41_RS01965 0.89 +0.6 395,079 - ABIE41_RS01965 0.89 -0.1 395,079 - ABIE41_RS01965 0.89 -1.2 395,079 - ABIE41_RS01965 0.89 -1.5 395,079 - ABIE41_RS01965 0.89 +0.9
Or see this region's nucleotide sequence