Strain Fitness in Bosea sp. OAE506 around ABIE41_RS22970

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS22955 and ABIE41_RS22960 overlap by 4 nucleotidesABIE41_RS22960 and ABIE41_RS22965 overlap by 1 nucleotidesABIE41_RS22965 and ABIE41_RS22970 are separated by 49 nucleotidesABIE41_RS22970 and ABIE41_RS22975 are separated by 66 nucleotidesABIE41_RS22975 and ABIE41_RS22980 overlap by 4 nucleotides ABIE41_RS22955: ABIE41_RS22955 - heme o synthase, at 4,728,111 to 4,729,058 _RS22955 ABIE41_RS22960: ABIE41_RS22960 - hypothetical protein, at 4,729,055 to 4,729,225 _RS22960 ABIE41_RS22965: ABIE41_RS22965 - cytochrome c oxidase assembly protein, at 4,729,225 to 4,729,839 _RS22965 ABIE41_RS22970: ABIE41_RS22970 - cytochrome c oxidase subunit 3, at 4,729,889 to 4,730,746 _RS22970 ABIE41_RS22975: ABIE41_RS22975 - DUF983 domain-containing protein, at 4,730,813 to 4,731,187 _RS22975 ABIE41_RS22980: ABIE41_RS22980 - SURF1 family cytochrome oxidase biogenesis protein, at 4,731,184 to 4,731,954 _RS22980 Position (kb) 4729 4730 4731Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4728.978 kb on + strandat 4729.528 kb on + strand, within ABIE41_RS22965at 4729.576 kb on + strand, within ABIE41_RS22965at 4729.577 kb on - strand, within ABIE41_RS22965at 4729.687 kb on + strand, within ABIE41_RS22965at 4729.687 kb on + strand, within ABIE41_RS22965at 4729.687 kb on + strand, within ABIE41_RS22965at 4729.687 kb on + strand, within ABIE41_RS22965at 4729.688 kb on - strand, within ABIE41_RS22965at 4729.688 kb on - strand, within ABIE41_RS22965at 4729.688 kb on - strand, within ABIE41_RS22965at 4729.688 kb on - strand, within ABIE41_RS22965at 4729.688 kb on - strand, within ABIE41_RS22965at 4729.689 kb on + strand, within ABIE41_RS22965at 4729.710 kb on + strand, within ABIE41_RS22965at 4729.750 kb on + strand, within ABIE41_RS22965at 4729.750 kb on + strand, within ABIE41_RS22965at 4729.751 kb on - strand, within ABIE41_RS22965at 4729.756 kb on + strand, within ABIE41_RS22965at 4729.756 kb on + strand, within ABIE41_RS22965at 4729.838 kb on - strandat 4729.886 kb on + strandat 4729.887 kb on - strandat 4729.919 kb on + strandat 4729.920 kb on - strandat 4730.072 kb on + strand, within ABIE41_RS22970at 4730.073 kb on - strand, within ABIE41_RS22970at 4730.159 kb on + strand, within ABIE41_RS22970at 4730.170 kb on - strand, within ABIE41_RS22970at 4730.170 kb on - strand, within ABIE41_RS22970at 4730.170 kb on - strand, within ABIE41_RS22970at 4730.259 kb on - strand, within ABIE41_RS22970at 4730.259 kb on - strand, within ABIE41_RS22970at 4730.478 kb on - strand, within ABIE41_RS22970at 4730.519 kb on + strand, within ABIE41_RS22970at 4730.520 kb on - strand, within ABIE41_RS22970at 4730.520 kb on - strand, within ABIE41_RS22970at 4730.609 kb on + strand, within ABIE41_RS22970at 4730.663 kb on + strandat 4730.664 kb on - strandat 4730.664 kb on - strandat 4730.664 kb on - strandat 4730.711 kb on + strandat 4730.711 kb on + strandat 4730.711 kb on + strandat 4730.712 kb on - strandat 4730.712 kb on - strandat 4730.712 kb on - strandat 4731.029 kb on + strand, within ABIE41_RS22975at 4731.030 kb on - strand, within ABIE41_RS22975at 4731.030 kb on - strand, within ABIE41_RS22975at 4731.030 kb on - strand, within ABIE41_RS22975at 4731.044 kb on + strand, within ABIE41_RS22975at 4731.045 kb on - strand, within ABIE41_RS22975at 4731.045 kb on - strand, within ABIE41_RS22975at 4731.149 kb on + strand, within ABIE41_RS22975at 4731.149 kb on + strand, within ABIE41_RS22975at 4731.703 kb on + strand, within ABIE41_RS22980at 4731.703 kb on + strand, within ABIE41_RS22980at 4731.703 kb on + strand, within ABIE41_RS22980at 4731.704 kb on - strand, within ABIE41_RS22980at 4731.704 kb on - strand, within ABIE41_RS22980at 4731.704 kb on - strand, within ABIE41_RS22980

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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4,728,978 + -1.2
4,729,528 + ABIE41_RS22965 0.49 -1.6
4,729,576 + ABIE41_RS22965 0.57 -1.1
4,729,577 - ABIE41_RS22965 0.57 -1.2
4,729,687 + ABIE41_RS22965 0.75 -1.0
4,729,687 + ABIE41_RS22965 0.75 +1.0
4,729,687 + ABIE41_RS22965 0.75 -1.0
4,729,687 + ABIE41_RS22965 0.75 -0.6
4,729,688 - ABIE41_RS22965 0.75 -1.6
4,729,688 - ABIE41_RS22965 0.75 -3.3
4,729,688 - ABIE41_RS22965 0.75 -1.7
4,729,688 - ABIE41_RS22965 0.75 -1.6
4,729,688 - ABIE41_RS22965 0.75 -0.6
4,729,689 + ABIE41_RS22965 0.75 -1.8
4,729,710 + ABIE41_RS22965 0.79 -2.0
4,729,750 + ABIE41_RS22965 0.85 -2.0
4,729,750 + ABIE41_RS22965 0.85 -0.2
4,729,751 - ABIE41_RS22965 0.86 -1.6
4,729,756 + ABIE41_RS22965 0.86 -2.4
4,729,756 + ABIE41_RS22965 0.86 -1.3
4,729,838 - -1.7
4,729,886 + -0.8
4,729,887 - +0.4
4,729,919 + -1.2
4,729,920 - -1.7
4,730,072 + ABIE41_RS22970 0.21 -1.2
4,730,073 - ABIE41_RS22970 0.21 -1.3
4,730,159 + ABIE41_RS22970 0.31 -2.0
4,730,170 - ABIE41_RS22970 0.33 -1.3
4,730,170 - ABIE41_RS22970 0.33 -1.6
4,730,170 - ABIE41_RS22970 0.33 -0.7
4,730,259 - ABIE41_RS22970 0.43 -0.6
4,730,259 - ABIE41_RS22970 0.43 -1.9
4,730,478 - ABIE41_RS22970 0.69 -1.2
4,730,519 + ABIE41_RS22970 0.73 +0.7
4,730,520 - ABIE41_RS22970 0.74 -2.1
4,730,520 - ABIE41_RS22970 0.74 -0.9
4,730,609 + ABIE41_RS22970 0.84 -1.6
4,730,663 + -1.6
4,730,664 - -0.0
4,730,664 - -1.6
4,730,664 - -1.6
4,730,711 + -0.0
4,730,711 + -0.3
4,730,711 + -0.1
4,730,712 - -0.8
4,730,712 - -0.1
4,730,712 - +0.7
4,731,029 + ABIE41_RS22975 0.58 -0.3
4,731,030 - ABIE41_RS22975 0.58 -1.3
4,731,030 - ABIE41_RS22975 0.58 -0.8
4,731,030 - ABIE41_RS22975 0.58 +0.5
4,731,044 + ABIE41_RS22975 0.62 +1.3
4,731,045 - ABIE41_RS22975 0.62 -0.6
4,731,045 - ABIE41_RS22975 0.62 -1.3
4,731,149 + ABIE41_RS22975 0.90 -0.0
4,731,149 + ABIE41_RS22975 0.90 +2.0
4,731,703 + ABIE41_RS22980 0.67 -1.5
4,731,703 + ABIE41_RS22980 0.67 -1.2
4,731,703 + ABIE41_RS22980 0.67 +0.1
4,731,704 - ABIE41_RS22980 0.67 -1.3
4,731,704 - ABIE41_RS22980 0.67 -1.1
4,731,704 - ABIE41_RS22980 0.67 +0.7

Or see this region's nucleotide sequence