Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20415

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20410 and ABIE41_RS20415 are separated by 63 nucleotidesABIE41_RS20415 and ABIE41_RS20420 are separated by 288 nucleotides ABIE41_RS20410: ABIE41_RS20410 - PLP-dependent aminotransferase family protein, at 4,194,370 to 4,195,752 _RS20410 ABIE41_RS20415: ABIE41_RS20415 - EAL domain-containing protein, at 4,195,816 to 4,196,985 _RS20415 ABIE41_RS20420: ABIE41_RS20420 - catalase, at 4,197,274 to 4,198,266 _RS20420 Position (kb) 4195 4196 4197Strain fitness (log2 ratio) -1 0 1 2at 4194.943 kb on + strand, within ABIE41_RS20410at 4195.069 kb on + strand, within ABIE41_RS20410at 4195.069 kb on + strand, within ABIE41_RS20410at 4195.069 kb on + strand, within ABIE41_RS20410at 4195.183 kb on + strand, within ABIE41_RS20410at 4195.183 kb on + strand, within ABIE41_RS20410at 4195.183 kb on + strand, within ABIE41_RS20410at 4195.184 kb on - strand, within ABIE41_RS20410at 4195.294 kb on + strand, within ABIE41_RS20410at 4195.294 kb on + strand, within ABIE41_RS20410at 4195.294 kb on + strand, within ABIE41_RS20410at 4195.294 kb on + strand, within ABIE41_RS20410at 4195.295 kb on - strand, within ABIE41_RS20410at 4195.295 kb on - strand, within ABIE41_RS20410at 4195.295 kb on - strand, within ABIE41_RS20410at 4195.572 kb on + strand, within ABIE41_RS20410at 4195.573 kb on - strand, within ABIE41_RS20410at 4195.710 kb on + strandat 4195.711 kb on - strandat 4195.979 kb on + strand, within ABIE41_RS20415at 4195.979 kb on + strand, within ABIE41_RS20415at 4195.979 kb on + strand, within ABIE41_RS20415at 4195.979 kb on + strand, within ABIE41_RS20415at 4195.980 kb on - strand, within ABIE41_RS20415at 4196.177 kb on + strand, within ABIE41_RS20415at 4196.177 kb on + strand, within ABIE41_RS20415at 4196.178 kb on - strand, within ABIE41_RS20415at 4196.178 kb on - strand, within ABIE41_RS20415at 4196.178 kb on - strand, within ABIE41_RS20415at 4196.178 kb on - strand, within ABIE41_RS20415at 4196.178 kb on - strand, within ABIE41_RS20415at 4196.178 kb on - strand, within ABIE41_RS20415at 4196.178 kb on - strand, within ABIE41_RS20415at 4196.178 kb on - strand, within ABIE41_RS20415at 4196.297 kb on + strand, within ABIE41_RS20415at 4196.297 kb on + strand, within ABIE41_RS20415at 4196.297 kb on + strand, within ABIE41_RS20415at 4196.297 kb on + strand, within ABIE41_RS20415at 4196.297 kb on + strand, within ABIE41_RS20415at 4196.297 kb on + strand, within ABIE41_RS20415at 4196.298 kb on - strand, within ABIE41_RS20415at 4196.298 kb on - strand, within ABIE41_RS20415at 4196.298 kb on - strand, within ABIE41_RS20415at 4196.298 kb on - strand, within ABIE41_RS20415at 4196.301 kb on + strand, within ABIE41_RS20415at 4196.301 kb on + strand, within ABIE41_RS20415at 4196.301 kb on + strand, within ABIE41_RS20415at 4196.301 kb on + strand, within ABIE41_RS20415at 4196.301 kb on + strand, within ABIE41_RS20415at 4196.301 kb on + strand, within ABIE41_RS20415at 4196.302 kb on - strand, within ABIE41_RS20415at 4196.302 kb on - strand, within ABIE41_RS20415at 4196.580 kb on + strand, within ABIE41_RS20415at 4196.581 kb on - strand, within ABIE41_RS20415at 4196.581 kb on - strand, within ABIE41_RS20415at 4196.581 kb on - strand, within ABIE41_RS20415at 4196.825 kb on + strand, within ABIE41_RS20415at 4196.825 kb on + strand, within ABIE41_RS20415at 4196.825 kb on + strand, within ABIE41_RS20415at 4196.930 kb on + strandat 4196.930 kb on + strandat 4196.930 kb on + strandat 4196.931 kb on - strandat 4197.049 kb on + strandat 4197.086 kb on - strandat 4197.086 kb on - strandat 4197.105 kb on + strandat 4197.105 kb on + strandat 4197.107 kb on - strandat 4197.128 kb on - strandat 4197.128 kb on - strandat 4197.128 kb on - strandat 4197.682 kb on + strand, within ABIE41_RS20420at 4197.690 kb on - strand, within ABIE41_RS20420at 4197.690 kb on - strand, within ABIE41_RS20420at 4197.690 kb on - strand, within ABIE41_RS20420at 4197.707 kb on + strand, within ABIE41_RS20420at 4197.708 kb on - strand, within ABIE41_RS20420at 4197.713 kb on - strand, within ABIE41_RS20420

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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4,194,943 + ABIE41_RS20410 0.41 +0.3
4,195,069 + ABIE41_RS20410 0.51 +0.0
4,195,069 + ABIE41_RS20410 0.51 -0.4
4,195,069 + ABIE41_RS20410 0.51 +0.3
4,195,183 + ABIE41_RS20410 0.59 +0.0
4,195,183 + ABIE41_RS20410 0.59 -0.3
4,195,183 + ABIE41_RS20410 0.59 +0.2
4,195,184 - ABIE41_RS20410 0.59 -0.1
4,195,294 + ABIE41_RS20410 0.67 -0.0
4,195,294 + ABIE41_RS20410 0.67 -0.1
4,195,294 + ABIE41_RS20410 0.67 -0.3
4,195,294 + ABIE41_RS20410 0.67 +0.4
4,195,295 - ABIE41_RS20410 0.67 +0.3
4,195,295 - ABIE41_RS20410 0.67 +0.1
4,195,295 - ABIE41_RS20410 0.67 +0.6
4,195,572 + ABIE41_RS20410 0.87 +0.4
4,195,573 - ABIE41_RS20410 0.87 +0.3
4,195,710 + -0.7
4,195,711 - -1.3
4,195,979 + ABIE41_RS20415 0.14 -0.2
4,195,979 + ABIE41_RS20415 0.14 -0.1
4,195,979 + ABIE41_RS20415 0.14 -0.1
4,195,979 + ABIE41_RS20415 0.14 +0.5
4,195,980 - ABIE41_RS20415 0.14 -1.6
4,196,177 + ABIE41_RS20415 0.31 -0.7
4,196,177 + ABIE41_RS20415 0.31 -0.3
4,196,178 - ABIE41_RS20415 0.31 +1.3
4,196,178 - ABIE41_RS20415 0.31 +0.8
4,196,178 - ABIE41_RS20415 0.31 -0.6
4,196,178 - ABIE41_RS20415 0.31 +0.0
4,196,178 - ABIE41_RS20415 0.31 -0.2
4,196,178 - ABIE41_RS20415 0.31 +0.1
4,196,178 - ABIE41_RS20415 0.31 -0.2
4,196,178 - ABIE41_RS20415 0.31 -0.5
4,196,297 + ABIE41_RS20415 0.41 -0.0
4,196,297 + ABIE41_RS20415 0.41 -0.4
4,196,297 + ABIE41_RS20415 0.41 -0.0
4,196,297 + ABIE41_RS20415 0.41 -0.6
4,196,297 + ABIE41_RS20415 0.41 -0.0
4,196,297 + ABIE41_RS20415 0.41 +0.7
4,196,298 - ABIE41_RS20415 0.41 -0.4
4,196,298 - ABIE41_RS20415 0.41 -0.3
4,196,298 - ABIE41_RS20415 0.41 +0.3
4,196,298 - ABIE41_RS20415 0.41 -0.5
4,196,301 + ABIE41_RS20415 0.41 -0.3
4,196,301 + ABIE41_RS20415 0.41 -1.0
4,196,301 + ABIE41_RS20415 0.41 +0.5
4,196,301 + ABIE41_RS20415 0.41 -0.3
4,196,301 + ABIE41_RS20415 0.41 -0.1
4,196,301 + ABIE41_RS20415 0.41 +0.3
4,196,302 - ABIE41_RS20415 0.42 -0.1
4,196,302 - ABIE41_RS20415 0.42 +0.2
4,196,580 + ABIE41_RS20415 0.65 -0.1
4,196,581 - ABIE41_RS20415 0.65 -0.2
4,196,581 - ABIE41_RS20415 0.65 +0.0
4,196,581 - ABIE41_RS20415 0.65 -0.6
4,196,825 + ABIE41_RS20415 0.86 -0.4
4,196,825 + ABIE41_RS20415 0.86 +0.5
4,196,825 + ABIE41_RS20415 0.86 +0.0
4,196,930 + -0.1
4,196,930 + -0.2
4,196,930 + +0.5
4,196,931 - -0.2
4,197,049 + +0.3
4,197,086 - -0.2
4,197,086 - -0.8
4,197,105 + -0.2
4,197,105 + +0.3
4,197,107 - +2.3
4,197,128 - -0.0
4,197,128 - -0.0
4,197,128 - -0.0
4,197,682 + ABIE41_RS20420 0.41 -0.2
4,197,690 - ABIE41_RS20420 0.42 -0.9
4,197,690 - ABIE41_RS20420 0.42 -0.8
4,197,690 - ABIE41_RS20420 0.42 +0.0
4,197,707 + ABIE41_RS20420 0.44 -0.1
4,197,708 - ABIE41_RS20420 0.44 +0.4
4,197,713 - ABIE41_RS20420 0.44 +0.6

Or see this region's nucleotide sequence