Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08890 and ABIE41_RS08895 are separated by 12 nucleotides ABIE41_RS08895 and ABIE41_RS08900 are separated by 46 nucleotides ABIE41_RS08900 and ABIE41_RS08905 are separated by 44 nucleotides ABIE41_RS08905 and ABIE41_RS08910 are separated by 158 nucleotides
ABIE41_RS08890: ABIE41_RS08890 - phosphate ABC transporter permease subunit PstC, at 1,840,070 to 1,841,041
_RS08890
ABIE41_RS08895: ABIE41_RS08895 - phosphate ABC transporter permease PstA, at 1,841,054 to 1,841,941
_RS08895
ABIE41_RS08900: ABIE41_RS08900 - phosphate ABC transporter ATP-binding protein PstB, at 1,841,988 to 1,842,788
_RS08900
ABIE41_RS08905: ABIE41_RS08905 - phosphate signaling complex protein PhoU, at 1,842,833 to 1,843,552
_RS08905
ABIE41_RS08910: ABIE41_RS08910 - phosphate regulon transcriptional regulator PhoB, at 1,843,711 to 1,844,409
_RS08910
Position (kb) 1841
1842
1843 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1841.372 kb on + strand, within ABIE41_RS08895 at 1841.372 kb on + strand, within ABIE41_RS08895 at 1841.372 kb on + strand, within ABIE41_RS08895 at 1841.372 kb on + strand, within ABIE41_RS08895 at 1841.474 kb on + strand, within ABIE41_RS08895 at 1841.474 kb on + strand, within ABIE41_RS08895 at 1841.474 kb on + strand, within ABIE41_RS08895 at 1841.474 kb on + strand, within ABIE41_RS08895 at 1841.816 kb on + strand, within ABIE41_RS08895 at 1841.816 kb on + strand, within ABIE41_RS08895 at 1841.816 kb on + strand, within ABIE41_RS08895 at 1841.816 kb on + strand, within ABIE41_RS08895 at 1841.816 kb on + strand, within ABIE41_RS08895 at 1841.816 kb on + strand, within ABIE41_RS08895 at 1841.816 kb on + strand, within ABIE41_RS08895 at 1841.816 kb on + strand, within ABIE41_RS08895 at 1841.837 kb on + strand, within ABIE41_RS08895 at 1841.837 kb on + strand, within ABIE41_RS08895 at 1842.069 kb on + strand, within ABIE41_RS08900 at 1842.192 kb on + strand, within ABIE41_RS08900 at 1842.192 kb on + strand, within ABIE41_RS08900 at 1842.193 kb on - strand, within ABIE41_RS08900 at 1842.251 kb on + strand, within ABIE41_RS08900 at 1842.336 kb on + strand, within ABIE41_RS08900 at 1842.337 kb on - strand, within ABIE41_RS08900 at 1842.675 kb on + strand, within ABIE41_RS08900 at 1842.675 kb on + strand, within ABIE41_RS08900 at 1842.690 kb on + strand, within ABIE41_RS08900 at 1842.690 kb on + strand, within ABIE41_RS08900 at 1842.690 kb on + strand, within ABIE41_RS08900 at 1842.690 kb on + strand, within ABIE41_RS08900 at 1842.691 kb on - strand, within ABIE41_RS08900 at 1842.765 kb on + strand at 1842.765 kb on + strand at 1842.766 kb on - strand at 1842.766 kb on - strand at 1842.766 kb on - strand at 1842.766 kb on - strand at 1842.858 kb on - strand at 1842.878 kb on - strand at 1843.214 kb on - strand, within ABIE41_RS08905 at 1843.214 kb on - strand, within ABIE41_RS08905 at 1843.214 kb on - strand, within ABIE41_RS08905 at 1843.214 kb on - strand, within ABIE41_RS08905 at 1843.260 kb on - strand, within ABIE41_RS08905 at 1843.356 kb on - strand, within ABIE41_RS08905 at 1843.356 kb on - strand, within ABIE41_RS08905 at 1843.356 kb on - strand, within ABIE41_RS08905 at 1843.356 kb on - strand, within ABIE41_RS08905 at 1843.356 kb on - strand, within ABIE41_RS08905 at 1843.546 kb on + strand at 1843.546 kb on + strand at 1843.546 kb on + strand at 1843.547 kb on - strand at 1843.547 kb on - strand at 1843.556 kb on + strand at 1843.768 kb on + strand at 1843.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 1,841,372 + ABIE41_RS08895 0.36 -1.2 1,841,372 + ABIE41_RS08895 0.36 -0.9 1,841,372 + ABIE41_RS08895 0.36 -1.1 1,841,372 + ABIE41_RS08895 0.36 +0.7 1,841,474 + ABIE41_RS08895 0.47 -1.8 1,841,474 + ABIE41_RS08895 0.47 -0.9 1,841,474 + ABIE41_RS08895 0.47 -0.9 1,841,474 + ABIE41_RS08895 0.47 -0.1 1,841,816 + ABIE41_RS08895 0.86 -0.0 1,841,816 + ABIE41_RS08895 0.86 -0.6 1,841,816 + ABIE41_RS08895 0.86 +1.1 1,841,816 + ABIE41_RS08895 0.86 -0.2 1,841,816 + ABIE41_RS08895 0.86 +0.4 1,841,816 + ABIE41_RS08895 0.86 +1.9 1,841,816 + ABIE41_RS08895 0.86 -0.0 1,841,816 + ABIE41_RS08895 0.86 +0.2 1,841,837 + ABIE41_RS08895 0.88 -0.0 1,841,837 + ABIE41_RS08895 0.88 +0.6 1,842,069 + ABIE41_RS08900 0.10 -0.5 1,842,192 + ABIE41_RS08900 0.25 -0.9 1,842,192 + ABIE41_RS08900 0.25 -1.6 1,842,193 - ABIE41_RS08900 0.26 +0.9 1,842,251 + ABIE41_RS08900 0.33 -0.4 1,842,336 + ABIE41_RS08900 0.43 -0.3 1,842,337 - ABIE41_RS08900 0.44 -0.6 1,842,675 + ABIE41_RS08900 0.86 -1.4 1,842,675 + ABIE41_RS08900 0.86 -1.3 1,842,690 + ABIE41_RS08900 0.88 -1.1 1,842,690 + ABIE41_RS08900 0.88 -1.4 1,842,690 + ABIE41_RS08900 0.88 -1.0 1,842,690 + ABIE41_RS08900 0.88 -0.6 1,842,691 - ABIE41_RS08900 0.88 -0.6 1,842,765 + -0.5 1,842,765 + -0.4 1,842,766 - -0.6 1,842,766 - -0.5 1,842,766 - -0.9 1,842,766 - -1.6 1,842,858 - -1.6 1,842,878 - -0.6 1,843,214 - ABIE41_RS08905 0.53 -0.3 1,843,214 - ABIE41_RS08905 0.53 -0.1 1,843,214 - ABIE41_RS08905 0.53 -0.6 1,843,214 - ABIE41_RS08905 0.53 -0.6 1,843,260 - ABIE41_RS08905 0.59 -1.0 1,843,356 - ABIE41_RS08905 0.73 -1.4 1,843,356 - ABIE41_RS08905 0.73 -1.0 1,843,356 - ABIE41_RS08905 0.73 -0.9 1,843,356 - ABIE41_RS08905 0.73 -1.4 1,843,356 - ABIE41_RS08905 0.73 -0.9 1,843,546 + -1.0 1,843,546 + +0.4 1,843,546 + +0.7 1,843,547 - -0.3 1,843,547 - +0.4 1,843,556 + +0.1 1,843,768 + -0.1 1,843,769 - -0.7
Or see this region's nucleotide sequence