Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07980 and ABIE41_RS07985 are separated by 10 nucleotides ABIE41_RS07985 and ABIE41_RS07990 are separated by 27 nucleotides
ABIE41_RS07980: ABIE41_RS07980 - serine hydrolase, at 1,639,334 to 1,640,917
_RS07980
ABIE41_RS07985: ABIE41_RS07985 - DMT family transporter, at 1,640,928 to 1,641,830
_RS07985
ABIE41_RS07990: ABIE41_RS07990 - GTP-binding protein, at 1,641,858 to 1,643,012
_RS07990
Position (kb) 1640
1641
1642 Strain fitness (log2 ratio) -1
0
1 at 1639.943 kb on + strand, within ABIE41_RS07980 at 1639.973 kb on + strand, within ABIE41_RS07980 at 1639.973 kb on + strand, within ABIE41_RS07980 at 1639.973 kb on + strand, within ABIE41_RS07980 at 1639.973 kb on + strand, within ABIE41_RS07980 at 1639.974 kb on - strand, within ABIE41_RS07980 at 1640.129 kb on + strand, within ABIE41_RS07980 at 1640.129 kb on + strand, within ABIE41_RS07980 at 1640.130 kb on - strand, within ABIE41_RS07980 at 1640.130 kb on - strand, within ABIE41_RS07980 at 1640.130 kb on - strand, within ABIE41_RS07980 at 1640.130 kb on - strand, within ABIE41_RS07980 at 1640.130 kb on - strand, within ABIE41_RS07980 at 1640.313 kb on + strand, within ABIE41_RS07980 at 1640.998 kb on - strand at 1641.198 kb on + strand, within ABIE41_RS07985 at 1641.198 kb on + strand, within ABIE41_RS07985 at 1641.199 kb on - strand, within ABIE41_RS07985 at 1641.199 kb on - strand, within ABIE41_RS07985 at 1641.199 kb on - strand, within ABIE41_RS07985 at 1641.255 kb on + strand, within ABIE41_RS07985 at 1641.256 kb on - strand, within ABIE41_RS07985 at 1641.606 kb on + strand, within ABIE41_RS07985 at 1641.631 kb on + strand, within ABIE41_RS07985 at 1641.632 kb on - strand, within ABIE41_RS07985 at 1641.747 kb on + strand at 1641.785 kb on + strand at 1642.483 kb on - strand, within ABIE41_RS07990
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 1,639,943 + ABIE41_RS07980 0.38 -1.4 1,639,973 + ABIE41_RS07980 0.40 -0.1 1,639,973 + ABIE41_RS07980 0.40 -0.7 1,639,973 + ABIE41_RS07980 0.40 -0.3 1,639,973 + ABIE41_RS07980 0.40 +0.9 1,639,974 - ABIE41_RS07980 0.40 -0.1 1,640,129 + ABIE41_RS07980 0.50 -1.4 1,640,129 + ABIE41_RS07980 0.50 -1.5 1,640,130 - ABIE41_RS07980 0.50 -0.5 1,640,130 - ABIE41_RS07980 0.50 +0.0 1,640,130 - ABIE41_RS07980 0.50 -0.1 1,640,130 - ABIE41_RS07980 0.50 -0.4 1,640,130 - ABIE41_RS07980 0.50 -0.9 1,640,313 + ABIE41_RS07980 0.62 -1.0 1,640,998 - -0.1 1,641,198 + ABIE41_RS07985 0.30 -0.5 1,641,198 + ABIE41_RS07985 0.30 +0.6 1,641,199 - ABIE41_RS07985 0.30 -0.1 1,641,199 - ABIE41_RS07985 0.30 +0.2 1,641,199 - ABIE41_RS07985 0.30 +0.1 1,641,255 + ABIE41_RS07985 0.36 -0.0 1,641,256 - ABIE41_RS07985 0.36 +0.5 1,641,606 + ABIE41_RS07985 0.75 -1.1 1,641,631 + ABIE41_RS07985 0.78 -0.7 1,641,632 - ABIE41_RS07985 0.78 -0.6 1,641,747 + -0.5 1,641,785 + -0.8 1,642,483 - ABIE41_RS07990 0.54 -0.0
Or see this region's nucleotide sequence