Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18830

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,877,483	+		ABIE41_RS18820	0.47	-0.0
3,877,483	+		ABIE41_RS18820	0.47	-0.1
3,877,483	+		ABIE41_RS18820	0.47	+0.4
3,877,483	+		ABIE41_RS18820	0.47	-0.6
3,877,483	+		ABIE41_RS18820	0.47	-0.2
3,877,484	-		ABIE41_RS18820	0.47	-0.2
3,877,484	-		ABIE41_RS18820	0.47	+0.6
3,877,484	-		ABIE41_RS18820	0.47	+0.3
3,877,484	-		ABIE41_RS18820	0.47	-0.1
3,877,484	-		ABIE41_RS18820	0.47	-0.3
3,877,484	-		ABIE41_RS18820	0.47	+0.4
3,877,484	-		ABIE41_RS18820	0.47	+2.0
3,877,484	-		ABIE41_RS18820	0.47	-0.0
3,877,484	-		ABIE41_RS18820	0.47	-0.3
3,877,485	+		ABIE41_RS18820	0.47	+1.8
3,877,485	+		ABIE41_RS18820	0.47	+0.3
3,877,485	+		ABIE41_RS18820	0.47	-0.6
3,877,613	+		ABIE41_RS18820	0.62	-0.1
3,877,613	+		ABIE41_RS18820	0.62	-0.0
3,877,613	+		ABIE41_RS18820	0.62	-0.1
3,877,614	-		ABIE41_RS18820	0.62	-0.3
3,877,614	-		ABIE41_RS18820	0.62	+0.9
3,877,614	-		ABIE41_RS18820	0.62	-1.7
3,877,643	+		ABIE41_RS18820	0.66	-0.5
3,877,643	+		ABIE41_RS18820	0.66	+0.4
3,877,643	+		ABIE41_RS18820	0.66	+0.2
3,877,643	+		ABIE41_RS18820	0.66	-0.8
3,877,643	+		ABIE41_RS18820	0.66	-0.3
3,877,644	-		ABIE41_RS18820	0.66	-0.4
3,877,644	-		ABIE41_RS18820	0.66	+0.5
3,877,644	-		ABIE41_RS18820	0.66	+0.5
3,877,742	-		ABIE41_RS18820	0.78	-0.4
3,877,742	-		ABIE41_RS18820	0.78	+0.2
3,877,754	+		ABIE41_RS18820	0.79	-0.4
3,877,754	+		ABIE41_RS18820	0.79	+0.6
3,877,911	+				-0.3
3,877,912	-				-0.3
3,877,930	+				-0.0
3,877,931	-				-0.0
3,877,931	-				-0.6
3,877,931	-				-0.6
3,877,931	-				-0.0
3,877,931	-				-0.8
3,878,012	+		ABIE41_RS18825	0.21	-0.7
3,878,012	+		ABIE41_RS18825	0.21	-0.2
3,878,013	-		ABIE41_RS18825	0.21	-0.5
3,878,054	+		ABIE41_RS18825	0.30	-0.0
3,878,054	+		ABIE41_RS18825	0.30	-2.4
3,878,054	+		ABIE41_RS18825	0.30	+0.9
3,878,054	+		ABIE41_RS18825	0.30	+0.1
3,878,054	+		ABIE41_RS18825	0.30	-0.8
3,878,055	-		ABIE41_RS18825	0.31	-0.1
3,878,055	-		ABIE41_RS18825	0.31	-0.3
3,878,134	-		ABIE41_RS18825	0.48	-0.9
3,878,188	+		ABIE41_RS18825	0.60	-0.2
3,878,189	-		ABIE41_RS18825	0.61	-1.8
3,878,329	+				+1.2
3,878,329	+				-0.8
3,878,329	+				-0.1
3,878,330	-				+0.6
3,878,330	-				+0.5
3,878,330	-				-1.1
3,878,602	+		ABIE41_RS18830	0.29	-0.3
3,878,602	+		ABIE41_RS18830	0.29	-0.4
3,878,602	+		ABIE41_RS18830	0.29	-0.1
3,878,603	-		ABIE41_RS18830	0.29	+0.5
3,878,603	-		ABIE41_RS18830	0.29	+0.0
3,878,605	-		ABIE41_RS18830	0.30	+0.0
3,878,825	+		ABIE41_RS18830	0.66	+0.5
3,878,826	-		ABIE41_RS18830	0.66	-0.8
3,878,826	-		ABIE41_RS18830	0.66	+0.5
3,878,826	-		ABIE41_RS18830	0.66	-0.9
3,878,826	-		ABIE41_RS18830	0.66	-0.3
3,878,942	-		ABIE41_RS18830	0.85	-0.6
3,879,034	+				-0.6
3,879,035	-				-0.2
3,879,047	+				-0.1
3,879,048	-				-0.1
3,879,048	-				-0.4
3,879,064	+				-0.6
3,879,065	-				+0.5
3,879,065	-				-0.2
3,879,065	-				+0.2
3,879,335	-				+0.3
3,879,335	-				-0.2
3,879,400	-				+0.2
3,879,410	+				-0.4
3,879,410	+				-0.2
3,879,410	+				+3.5
3,879,411	-				-0.5
3,879,517	+				+0.1
3,879,517	+				-0.3
3,879,550	+				-0.2
3,879,550	+				-0.6
3,879,587	+				+0.9
3,879,587	+				+1.6
3,879,587	+				+0.2
3,879,587	+				-0.1
3,879,588	-				-0.2
3,879,588	-				-1.1
3,879,588	-				-0.5
3,879,588	-				+0.2
3,879,588	-				-1.7
3,879,592	-				-0.1
3,879,639	+		ABIE41_RS18835	0.12	+0.9
3,879,639	+		ABIE41_RS18835	0.12	+0.2
3,879,639	+		ABIE41_RS18835	0.12	-0.7
3,879,639	+		ABIE41_RS18835	0.12	-0.3
3,879,640	-		ABIE41_RS18835	0.12	-2.0
3,879,640	-		ABIE41_RS18835	0.12	-0.5
3,879,640	-		ABIE41_RS18835	0.12	+0.7
3,879,640	-		ABIE41_RS18835	0.12	-0.4
3,879,689	+		ABIE41_RS18835	0.22	+1.2
3,879,844	+		ABIE41_RS18835	0.51	-0.7
3,879,844	+		ABIE41_RS18835	0.51	+0.4
3,879,845	-		ABIE41_RS18835	0.51	-1.1
3,879,845	-		ABIE41_RS18835	0.51	-1.6
3,879,845	-		ABIE41_RS18835	0.51	+0.1
3,879,941	-		ABIE41_RS18835	0.70	+0.1
3,879,941	-		ABIE41_RS18835	0.70	-0.3
3,879,941	-		ABIE41_RS18835	0.70	+0.5
3,879,962	+		ABIE41_RS18835	0.74	-0.7
3,879,962	+		ABIE41_RS18835	0.74	-0.3
3,879,962	+		ABIE41_RS18835	0.74	+0.1
3,879,963	-		ABIE41_RS18835	0.74	+0.4
3,879,963	-		ABIE41_RS18835	0.74	+0.3
3,879,963	-		ABIE41_RS18835	0.74	-0.1