Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18815

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,874,364	+		ABIE41_RS18805	0.88	-0.2
3,874,364	+		ABIE41_RS18805	0.88	-1.6
3,874,365	-		ABIE41_RS18805	0.88	-0.4
3,874,448	+				+0.1
3,874,448	+				+0.1
3,874,450	-				-0.3
3,874,479	+				-0.8
3,874,479	+				-0.5
3,874,479	+				-0.8
3,874,479	+				+0.3
3,874,479	+				+0.1
3,874,479	+				+0.1
3,874,480	-				+1.5
3,874,480	-				-0.0
3,874,480	-				+0.4
3,874,480	-				+0.2
3,874,480	-				+0.5
3,874,480	-				+1.5
3,874,480	-				-0.4
3,874,480	-				+0.1
3,874,585	+		ABIE41_RS18810	0.12	-0.2
3,874,585	+		ABIE41_RS18810	0.12	+0.9
3,874,586	-		ABIE41_RS18810	0.12	+0.3
3,874,586	-		ABIE41_RS18810	0.12	+0.7
3,874,586	-		ABIE41_RS18810	0.12	-0.3
3,874,720	+		ABIE41_RS18810	0.28	-0.6
3,874,721	-		ABIE41_RS18810	0.28	-0.6
3,874,746	+		ABIE41_RS18810	0.31	-0.8
3,874,747	+		ABIE41_RS18810	0.31	-0.2
3,874,747	+		ABIE41_RS18810	0.31	+0.2
3,874,748	-		ABIE41_RS18810	0.31	-0.8
3,874,748	-		ABIE41_RS18810	0.31	+0.2
3,874,748	-		ABIE41_RS18810	0.31	+0.1
3,874,748	-		ABIE41_RS18810	0.31	+0.4
3,874,759	-		ABIE41_RS18810	0.33	-0.3
3,874,843	+		ABIE41_RS18810	0.42	-0.7
3,874,843	+		ABIE41_RS18810	0.42	-0.6
3,874,847	-		ABIE41_RS18810	0.43	-0.5
3,874,889	+		ABIE41_RS18810	0.48	+0.2
3,874,981	+		ABIE41_RS18810	0.59	-0.6
3,874,981	+		ABIE41_RS18810	0.59	+1.2
3,874,982	-		ABIE41_RS18810	0.59	-0.7
3,875,004	+		ABIE41_RS18810	0.61	+1.2
3,875,005	-		ABIE41_RS18810	0.61	+0.5
3,875,005	-		ABIE41_RS18810	0.61	+0.2
3,875,005	-		ABIE41_RS18810	0.61	-1.1
3,875,074	+		ABIE41_RS18810	0.70	-0.2
3,875,075	-		ABIE41_RS18810	0.70	+0.3
3,875,075	-		ABIE41_RS18810	0.70	-2.0
3,875,075	-		ABIE41_RS18810	0.70	-0.0
3,875,568	+		ABIE41_RS18815	0.14	-0.1
3,875,568	+		ABIE41_RS18815	0.14	+0.7
3,875,568	+		ABIE41_RS18815	0.14	-0.5
3,875,568	+		ABIE41_RS18815	0.14	+0.1
3,875,568	+		ABIE41_RS18815	0.14	-0.5
3,875,568	+		ABIE41_RS18815	0.14	-0.2
3,875,568	+		ABIE41_RS18815	0.14	+0.1
3,875,568	+		ABIE41_RS18815	0.14	-0.0
3,875,568	+		ABIE41_RS18815	0.14	-0.2
3,875,569	-		ABIE41_RS18815	0.14	-0.3
3,875,569	-		ABIE41_RS18815	0.14	-0.4
3,875,569	-		ABIE41_RS18815	0.14	+0.7
3,875,569	-		ABIE41_RS18815	0.14	-0.4
3,875,569	-		ABIE41_RS18815	0.14	+0.1
3,875,569	-		ABIE41_RS18815	0.14	-0.5
3,875,569	-		ABIE41_RS18815	0.14	+0.4
3,875,724	+		ABIE41_RS18815	0.24	-0.7
3,875,742	+		ABIE41_RS18815	0.25	-0.6
3,875,802	+		ABIE41_RS18815	0.28	+0.0
3,875,803	-		ABIE41_RS18815	0.28	-0.4
3,875,849	+		ABIE41_RS18815	0.31	+0.2
3,875,851	-		ABIE41_RS18815	0.31	+0.8
3,875,916	-		ABIE41_RS18815	0.35	+0.2
3,876,087	+		ABIE41_RS18815	0.46	+0.2
3,876,087	+		ABIE41_RS18815	0.46	+0.1
3,876,087	+		ABIE41_RS18815	0.46	-0.9
3,876,087	+		ABIE41_RS18815	0.46	-0.1
3,876,087	+		ABIE41_RS18815	0.46	+0.1
3,876,087	+		ABIE41_RS18815	0.46	+0.5
3,876,087	+		ABIE41_RS18815	0.46	+0.4
3,876,088	-		ABIE41_RS18815	0.46	+0.9
3,876,088	-		ABIE41_RS18815	0.46	-0.2
3,876,088	-		ABIE41_RS18815	0.46	+0.1
3,876,088	-		ABIE41_RS18815	0.46	-0.0
3,876,088	-		ABIE41_RS18815	0.46	+0.3
3,876,088	-		ABIE41_RS18815	0.46	+0.3
3,876,089	+		ABIE41_RS18815	0.46	+0.4
3,876,090	-		ABIE41_RS18815	0.46	-1.8
3,876,090	-		ABIE41_RS18815	0.46	+0.8
3,876,090	-		ABIE41_RS18815	0.46	-0.1
3,876,090	-		ABIE41_RS18815	0.46	-0.2
3,876,090	-		ABIE41_RS18815	0.46	+0.1
3,876,201	+		ABIE41_RS18815	0.53	-0.0
3,876,202	-		ABIE41_RS18815	0.53	-0.8
3,876,240	+		ABIE41_RS18815	0.55	+1.4
3,876,240	+		ABIE41_RS18815	0.55	-0.4
3,876,240	+		ABIE41_RS18815	0.55	+0.1
3,876,240	+		ABIE41_RS18815	0.55	-0.4
3,876,240	+		ABIE41_RS18815	0.55	+0.3
3,876,240	+		ABIE41_RS18815	0.55	-0.5
3,876,241	-		ABIE41_RS18815	0.55	+2.4
3,876,241	-		ABIE41_RS18815	0.55	-0.7
3,876,242	+		ABIE41_RS18815	0.55	-0.3
3,876,242	+		ABIE41_RS18815	0.55	-0.1
3,876,242	+		ABIE41_RS18815	0.55	+0.6
3,876,242	+		ABIE41_RS18815	0.55	+0.2
3,876,243	-		ABIE41_RS18815	0.56	-0.2
3,876,243	-		ABIE41_RS18815	0.56	-0.1
3,876,243	-		ABIE41_RS18815	0.56	-0.0
3,876,243	-		ABIE41_RS18815	0.56	-0.2
3,876,243	-		ABIE41_RS18815	0.56	+0.2
3,876,683	+		ABIE41_RS18815	0.83	-0.0
3,876,683	+		ABIE41_RS18815	0.83	-0.7
3,876,683	+		ABIE41_RS18815	0.83	-0.4
3,876,683	+		ABIE41_RS18815	0.83	-0.0
3,876,684	-		ABIE41_RS18815	0.83	+0.1
3,876,684	-		ABIE41_RS18815	0.83	+0.5
3,876,831	+				-0.3
3,876,831	+				+0.2
3,876,832	-				-0.3
3,876,866	+				-0.2
3,876,866	+				+0.3
3,876,866	+				-0.4
3,876,866	+				+0.2
3,876,867	-				-0.2
3,876,867	-				-0.2
3,876,900	+				-0.4
3,876,900	+				+0.0
3,876,901	-				+0.3
3,876,901	-				-0.8
3,877,060	+				+0.2
3,877,060	+				-0.1
3,877,237	+		ABIE41_RS18820	0.17	+0.0
3,877,238	-		ABIE41_RS18820	0.17	-0.1
3,877,238	-		ABIE41_RS18820	0.17	+0.2
3,877,251	-		ABIE41_RS18820	0.19	+0.0
3,877,263	-		ABIE41_RS18820	0.20	-0.7
3,877,352	-		ABIE41_RS18820	0.31	+0.6
3,877,356	+		ABIE41_RS18820	0.31	+0.6
3,877,356	+		ABIE41_RS18820	0.31	-0.3
3,877,357	-		ABIE41_RS18820	0.32	-0.4
3,877,357	-		ABIE41_RS18820	0.32	-0.2
3,877,483	+		ABIE41_RS18820	0.47	-0.0
3,877,483	+		ABIE41_RS18820	0.47	-0.1
3,877,483	+		ABIE41_RS18820	0.47	+0.4
3,877,483	+		ABIE41_RS18820	0.47	-0.6
3,877,483	+		ABIE41_RS18820	0.47	-0.2
3,877,484	-		ABIE41_RS18820	0.47	-0.2
3,877,484	-		ABIE41_RS18820	0.47	+0.6
3,877,484	-		ABIE41_RS18820	0.47	+0.3
3,877,484	-		ABIE41_RS18820	0.47	-0.1
3,877,484	-		ABIE41_RS18820	0.47	-0.3
3,877,484	-		ABIE41_RS18820	0.47	+0.4
3,877,484	-		ABIE41_RS18820	0.47	+2.0
3,877,484	-		ABIE41_RS18820	0.47	-0.0
3,877,484	-		ABIE41_RS18820	0.47	-0.3
3,877,485	+		ABIE41_RS18820	0.47	+1.8
3,877,485	+		ABIE41_RS18820	0.47	+0.3
3,877,485	+		ABIE41_RS18820	0.47	-0.6
3,877,613	+		ABIE41_RS18820	0.62	-0.1
3,877,613	+		ABIE41_RS18820	0.62	-0.0
3,877,613	+		ABIE41_RS18820	0.62	-0.1
3,877,614	-		ABIE41_RS18820	0.62	-0.3
3,877,614	-		ABIE41_RS18820	0.62	+0.9
3,877,614	-		ABIE41_RS18820	0.62	-1.7
3,877,643	+		ABIE41_RS18820	0.66	-0.5
3,877,643	+		ABIE41_RS18820	0.66	+0.4
3,877,643	+		ABIE41_RS18820	0.66	+0.2
3,877,643	+		ABIE41_RS18820	0.66	-0.8
3,877,643	+		ABIE41_RS18820	0.66	-0.3
3,877,644	-		ABIE41_RS18820	0.66	-0.4
3,877,644	-		ABIE41_RS18820	0.66	+0.5
3,877,644	-		ABIE41_RS18820	0.66	+0.5
3,877,742	-		ABIE41_RS18820	0.78	-0.4
3,877,742	-		ABIE41_RS18820	0.78	+0.2
3,877,754	+		ABIE41_RS18820	0.79	-0.4
3,877,754	+		ABIE41_RS18820	0.79	+0.6
3,877,911	+				-0.3
3,877,912	-				-0.3
3,877,930	+				-0.0
3,877,931	-				-0.0
3,877,931	-				-0.6
3,877,931	-				-0.6
3,877,931	-				-0.0
3,877,931	-				-0.8