Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18810

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18800 and ABIE41_RS18805 overlap by 4 nucleotidesABIE41_RS18805 and ABIE41_RS18810 are separated by 14 nucleotidesABIE41_RS18810 and ABIE41_RS18815 are separated by 11 nucleotides ABIE41_RS18800: ABIE41_RS18800 - VWA domain-containing protein, at 3,872,475 to 3,873,587 _RS18800 ABIE41_RS18805: ABIE41_RS18805 - amidohydrolase family protein, at 3,873,584 to 3,874,468 _RS18805 ABIE41_RS18810: ABIE41_RS18810 - MBL fold metallo-hydrolase, at 3,874,483 to 3,875,331 _RS18810 ABIE41_RS18815: ABIE41_RS18815 - isochorismatase family protein, at 3,875,343 to 3,876,962 _RS18815 Position (kb) 3874 3875 3876Strain fitness (log2 ratio) -2 -1 0 1 2at 3873.521 kb on + strandat 3873.521 kb on + strandat 3873.521 kb on + strandat 3873.522 kb on - strandat 3873.559 kb on + strandat 3873.560 kb on - strandat 3873.560 kb on - strandat 3873.613 kb on + strandat 3873.613 kb on + strandat 3873.614 kb on - strandat 3873.713 kb on + strand, within ABIE41_RS18805at 3873.755 kb on + strand, within ABIE41_RS18805at 3873.755 kb on + strand, within ABIE41_RS18805at 3873.755 kb on + strand, within ABIE41_RS18805at 3873.755 kb on + strand, within ABIE41_RS18805at 3873.755 kb on + strand, within ABIE41_RS18805at 3873.756 kb on - strand, within ABIE41_RS18805at 3873.756 kb on - strand, within ABIE41_RS18805at 3873.855 kb on - strand, within ABIE41_RS18805at 3873.962 kb on + strand, within ABIE41_RS18805at 3874.035 kb on - strand, within ABIE41_RS18805at 3874.364 kb on + strand, within ABIE41_RS18805at 3874.364 kb on + strand, within ABIE41_RS18805at 3874.365 kb on - strand, within ABIE41_RS18805at 3874.448 kb on + strandat 3874.448 kb on + strandat 3874.450 kb on - strandat 3874.479 kb on + strandat 3874.479 kb on + strandat 3874.479 kb on + strandat 3874.479 kb on + strandat 3874.479 kb on + strandat 3874.479 kb on + strandat 3874.480 kb on - strandat 3874.480 kb on - strandat 3874.480 kb on - strandat 3874.480 kb on - strandat 3874.480 kb on - strandat 3874.480 kb on - strandat 3874.480 kb on - strandat 3874.480 kb on - strandat 3874.585 kb on + strand, within ABIE41_RS18810at 3874.585 kb on + strand, within ABIE41_RS18810at 3874.586 kb on - strand, within ABIE41_RS18810at 3874.586 kb on - strand, within ABIE41_RS18810at 3874.586 kb on - strand, within ABIE41_RS18810at 3874.720 kb on + strand, within ABIE41_RS18810at 3874.721 kb on - strand, within ABIE41_RS18810at 3874.746 kb on + strand, within ABIE41_RS18810at 3874.747 kb on + strand, within ABIE41_RS18810at 3874.747 kb on + strand, within ABIE41_RS18810at 3874.748 kb on - strand, within ABIE41_RS18810at 3874.748 kb on - strand, within ABIE41_RS18810at 3874.748 kb on - strand, within ABIE41_RS18810at 3874.748 kb on - strand, within ABIE41_RS18810at 3874.759 kb on - strand, within ABIE41_RS18810at 3874.843 kb on + strand, within ABIE41_RS18810at 3874.843 kb on + strand, within ABIE41_RS18810at 3874.847 kb on - strand, within ABIE41_RS18810at 3874.889 kb on + strand, within ABIE41_RS18810at 3874.981 kb on + strand, within ABIE41_RS18810at 3874.981 kb on + strand, within ABIE41_RS18810at 3874.982 kb on - strand, within ABIE41_RS18810at 3875.004 kb on + strand, within ABIE41_RS18810at 3875.005 kb on - strand, within ABIE41_RS18810at 3875.005 kb on - strand, within ABIE41_RS18810at 3875.005 kb on - strand, within ABIE41_RS18810at 3875.074 kb on + strand, within ABIE41_RS18810at 3875.075 kb on - strand, within ABIE41_RS18810at 3875.075 kb on - strand, within ABIE41_RS18810at 3875.075 kb on - strand, within ABIE41_RS18810at 3875.568 kb on + strand, within ABIE41_RS18815at 3875.568 kb on + strand, within ABIE41_RS18815at 3875.568 kb on + strand, within ABIE41_RS18815at 3875.568 kb on + strand, within ABIE41_RS18815at 3875.568 kb on + strand, within ABIE41_RS18815at 3875.568 kb on + strand, within ABIE41_RS18815at 3875.568 kb on + strand, within ABIE41_RS18815at 3875.568 kb on + strand, within ABIE41_RS18815at 3875.568 kb on + strand, within ABIE41_RS18815at 3875.569 kb on - strand, within ABIE41_RS18815at 3875.569 kb on - strand, within ABIE41_RS18815at 3875.569 kb on - strand, within ABIE41_RS18815at 3875.569 kb on - strand, within ABIE41_RS18815at 3875.569 kb on - strand, within ABIE41_RS18815at 3875.569 kb on - strand, within ABIE41_RS18815at 3875.569 kb on - strand, within ABIE41_RS18815at 3875.724 kb on + strand, within ABIE41_RS18815at 3875.742 kb on + strand, within ABIE41_RS18815at 3875.802 kb on + strand, within ABIE41_RS18815at 3875.803 kb on - strand, within ABIE41_RS18815at 3875.849 kb on + strand, within ABIE41_RS18815at 3875.851 kb on - strand, within ABIE41_RS18815at 3875.916 kb on - strand, within ABIE41_RS18815at 3876.087 kb on + strand, within ABIE41_RS18815at 3876.087 kb on + strand, within ABIE41_RS18815at 3876.087 kb on + strand, within ABIE41_RS18815at 3876.087 kb on + strand, within ABIE41_RS18815at 3876.087 kb on + strand, within ABIE41_RS18815at 3876.087 kb on + strand, within ABIE41_RS18815at 3876.087 kb on + strand, within ABIE41_RS18815at 3876.088 kb on - strand, within ABIE41_RS18815at 3876.088 kb on - strand, within ABIE41_RS18815at 3876.088 kb on - strand, within ABIE41_RS18815at 3876.088 kb on - strand, within ABIE41_RS18815at 3876.088 kb on - strand, within ABIE41_RS18815at 3876.088 kb on - strand, within ABIE41_RS18815at 3876.089 kb on + strand, within ABIE41_RS18815at 3876.090 kb on - strand, within ABIE41_RS18815at 3876.090 kb on - strand, within ABIE41_RS18815at 3876.090 kb on - strand, within ABIE41_RS18815at 3876.090 kb on - strand, within ABIE41_RS18815at 3876.090 kb on - strand, within ABIE41_RS18815at 3876.201 kb on + strand, within ABIE41_RS18815at 3876.202 kb on - strand, within ABIE41_RS18815at 3876.240 kb on + strand, within ABIE41_RS18815at 3876.240 kb on + strand, within ABIE41_RS18815at 3876.240 kb on + strand, within ABIE41_RS18815at 3876.240 kb on + strand, within ABIE41_RS18815at 3876.240 kb on + strand, within ABIE41_RS18815at 3876.240 kb on + strand, within ABIE41_RS18815at 3876.241 kb on - strand, within ABIE41_RS18815at 3876.241 kb on - strand, within ABIE41_RS18815at 3876.242 kb on + strand, within ABIE41_RS18815at 3876.242 kb on + strand, within ABIE41_RS18815at 3876.242 kb on + strand, within ABIE41_RS18815at 3876.242 kb on + strand, within ABIE41_RS18815at 3876.243 kb on - strand, within ABIE41_RS18815at 3876.243 kb on - strand, within ABIE41_RS18815at 3876.243 kb on - strand, within ABIE41_RS18815at 3876.243 kb on - strand, within ABIE41_RS18815at 3876.243 kb on - strand, within ABIE41_RS18815

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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3,873,521 + +0.7
3,873,521 + +0.3
3,873,521 + +0.6
3,873,522 - -0.1
3,873,559 + -0.3
3,873,560 - +0.1
3,873,560 - -0.1
3,873,613 + -0.7
3,873,613 + -0.2
3,873,614 - -0.3
3,873,713 + ABIE41_RS18805 0.15 +0.4
3,873,755 + ABIE41_RS18805 0.19 +0.0
3,873,755 + ABIE41_RS18805 0.19 +0.8
3,873,755 + ABIE41_RS18805 0.19 -0.4
3,873,755 + ABIE41_RS18805 0.19 +0.7
3,873,755 + ABIE41_RS18805 0.19 -0.8
3,873,756 - ABIE41_RS18805 0.19 +0.2
3,873,756 - ABIE41_RS18805 0.19 -0.4
3,873,855 - ABIE41_RS18805 0.31 -0.9
3,873,962 + ABIE41_RS18805 0.43 -0.1
3,874,035 - ABIE41_RS18805 0.51 +0.4
3,874,364 + ABIE41_RS18805 0.88 -0.2
3,874,364 + ABIE41_RS18805 0.88 -1.6
3,874,365 - ABIE41_RS18805 0.88 -0.4
3,874,448 + +0.1
3,874,448 + +0.1
3,874,450 - -0.3
3,874,479 + -0.8
3,874,479 + -0.5
3,874,479 + -0.8
3,874,479 + +0.3
3,874,479 + +0.1
3,874,479 + +0.1
3,874,480 - +1.5
3,874,480 - -0.0
3,874,480 - +0.4
3,874,480 - +0.2
3,874,480 - +0.5
3,874,480 - +1.5
3,874,480 - -0.4
3,874,480 - +0.1
3,874,585 + ABIE41_RS18810 0.12 -0.2
3,874,585 + ABIE41_RS18810 0.12 +0.9
3,874,586 - ABIE41_RS18810 0.12 +0.3
3,874,586 - ABIE41_RS18810 0.12 +0.7
3,874,586 - ABIE41_RS18810 0.12 -0.3
3,874,720 + ABIE41_RS18810 0.28 -0.6
3,874,721 - ABIE41_RS18810 0.28 -0.6
3,874,746 + ABIE41_RS18810 0.31 -0.8
3,874,747 + ABIE41_RS18810 0.31 -0.2
3,874,747 + ABIE41_RS18810 0.31 +0.2
3,874,748 - ABIE41_RS18810 0.31 -0.8
3,874,748 - ABIE41_RS18810 0.31 +0.2
3,874,748 - ABIE41_RS18810 0.31 +0.1
3,874,748 - ABIE41_RS18810 0.31 +0.4
3,874,759 - ABIE41_RS18810 0.33 -0.3
3,874,843 + ABIE41_RS18810 0.42 -0.7
3,874,843 + ABIE41_RS18810 0.42 -0.6
3,874,847 - ABIE41_RS18810 0.43 -0.5
3,874,889 + ABIE41_RS18810 0.48 +0.2
3,874,981 + ABIE41_RS18810 0.59 -0.6
3,874,981 + ABIE41_RS18810 0.59 +1.2
3,874,982 - ABIE41_RS18810 0.59 -0.7
3,875,004 + ABIE41_RS18810 0.61 +1.2
3,875,005 - ABIE41_RS18810 0.61 +0.5
3,875,005 - ABIE41_RS18810 0.61 +0.2
3,875,005 - ABIE41_RS18810 0.61 -1.1
3,875,074 + ABIE41_RS18810 0.70 -0.2
3,875,075 - ABIE41_RS18810 0.70 +0.3
3,875,075 - ABIE41_RS18810 0.70 -2.0
3,875,075 - ABIE41_RS18810 0.70 -0.0
3,875,568 + ABIE41_RS18815 0.14 -0.1
3,875,568 + ABIE41_RS18815 0.14 +0.7
3,875,568 + ABIE41_RS18815 0.14 -0.5
3,875,568 + ABIE41_RS18815 0.14 +0.1
3,875,568 + ABIE41_RS18815 0.14 -0.5
3,875,568 + ABIE41_RS18815 0.14 -0.2
3,875,568 + ABIE41_RS18815 0.14 +0.1
3,875,568 + ABIE41_RS18815 0.14 -0.0
3,875,568 + ABIE41_RS18815 0.14 -0.2
3,875,569 - ABIE41_RS18815 0.14 -0.3
3,875,569 - ABIE41_RS18815 0.14 -0.4
3,875,569 - ABIE41_RS18815 0.14 +0.7
3,875,569 - ABIE41_RS18815 0.14 -0.4
3,875,569 - ABIE41_RS18815 0.14 +0.1
3,875,569 - ABIE41_RS18815 0.14 -0.5
3,875,569 - ABIE41_RS18815 0.14 +0.4
3,875,724 + ABIE41_RS18815 0.24 -0.7
3,875,742 + ABIE41_RS18815 0.25 -0.6
3,875,802 + ABIE41_RS18815 0.28 +0.0
3,875,803 - ABIE41_RS18815 0.28 -0.4
3,875,849 + ABIE41_RS18815 0.31 +0.2
3,875,851 - ABIE41_RS18815 0.31 +0.8
3,875,916 - ABIE41_RS18815 0.35 +0.2
3,876,087 + ABIE41_RS18815 0.46 +0.2
3,876,087 + ABIE41_RS18815 0.46 +0.1
3,876,087 + ABIE41_RS18815 0.46 -0.9
3,876,087 + ABIE41_RS18815 0.46 -0.1
3,876,087 + ABIE41_RS18815 0.46 +0.1
3,876,087 + ABIE41_RS18815 0.46 +0.5
3,876,087 + ABIE41_RS18815 0.46 +0.4
3,876,088 - ABIE41_RS18815 0.46 +0.9
3,876,088 - ABIE41_RS18815 0.46 -0.2
3,876,088 - ABIE41_RS18815 0.46 +0.1
3,876,088 - ABIE41_RS18815 0.46 -0.0
3,876,088 - ABIE41_RS18815 0.46 +0.3
3,876,088 - ABIE41_RS18815 0.46 +0.3
3,876,089 + ABIE41_RS18815 0.46 +0.4
3,876,090 - ABIE41_RS18815 0.46 -1.8
3,876,090 - ABIE41_RS18815 0.46 +0.8
3,876,090 - ABIE41_RS18815 0.46 -0.1
3,876,090 - ABIE41_RS18815 0.46 -0.2
3,876,090 - ABIE41_RS18815 0.46 +0.1
3,876,201 + ABIE41_RS18815 0.53 -0.0
3,876,202 - ABIE41_RS18815 0.53 -0.8
3,876,240 + ABIE41_RS18815 0.55 +1.4
3,876,240 + ABIE41_RS18815 0.55 -0.4
3,876,240 + ABIE41_RS18815 0.55 +0.1
3,876,240 + ABIE41_RS18815 0.55 -0.4
3,876,240 + ABIE41_RS18815 0.55 +0.3
3,876,240 + ABIE41_RS18815 0.55 -0.5
3,876,241 - ABIE41_RS18815 0.55 +2.4
3,876,241 - ABIE41_RS18815 0.55 -0.7
3,876,242 + ABIE41_RS18815 0.55 -0.3
3,876,242 + ABIE41_RS18815 0.55 -0.1
3,876,242 + ABIE41_RS18815 0.55 +0.6
3,876,242 + ABIE41_RS18815 0.55 +0.2
3,876,243 - ABIE41_RS18815 0.56 -0.2
3,876,243 - ABIE41_RS18815 0.56 -0.1
3,876,243 - ABIE41_RS18815 0.56 -0.0
3,876,243 - ABIE41_RS18815 0.56 -0.2
3,876,243 - ABIE41_RS18815 0.56 +0.2

Or see this region's nucleotide sequence