Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03475

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS03465 and ABIE41_RS03470 are separated by 111 nucleotidesABIE41_RS03470 and ABIE41_RS03475 are separated by 36 nucleotidesABIE41_RS03475 and ABIE41_RS03480 are separated by 152 nucleotides ABIE41_RS03465: ABIE41_RS03465 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 720,400 to 721,479 _RS03465 ABIE41_RS03470: ABIE41_RS03470 - thioredoxin family protein, at 721,591 to 722,232 _RS03470 ABIE41_RS03475: ABIE41_RS03475 - protein-disulfide reductase DsbD domain-containing protein, at 722,269 to 724,425 _RS03475 ABIE41_RS03480: ABIE41_RS03480 - hypothetical protein, at 724,578 to 725,390 _RS03480 Position (kb) 722 723 724 725Strain fitness (log2 ratio) -2 -1 0 1 2at 721.625 kb on + strandat 721.625 kb on + strandat 721.625 kb on + strandat 721.626 kb on - strandat 721.626 kb on - strandat 721.626 kb on - strandat 721.665 kb on + strand, within ABIE41_RS03470at 721.666 kb on - strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.752 kb on + strand, within ABIE41_RS03470at 721.752 kb on + strand, within ABIE41_RS03470at 721.752 kb on + strand, within ABIE41_RS03470at 721.753 kb on - strand, within ABIE41_RS03470at 721.754 kb on + strand, within ABIE41_RS03470at 721.754 kb on + strand, within ABIE41_RS03470at 721.755 kb on - strand, within ABIE41_RS03470at 721.755 kb on - strand, within ABIE41_RS03470at 721.755 kb on - strand, within ABIE41_RS03470at 721.755 kb on - strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 722.003 kb on + strand, within ABIE41_RS03470at 722.003 kb on + strand, within ABIE41_RS03470at 722.003 kb on + strand, within ABIE41_RS03470at 722.004 kb on - strand, within ABIE41_RS03470at 722.004 kb on - strand, within ABIE41_RS03470at 722.004 kb on - strand, within ABIE41_RS03470at 722.018 kb on + strand, within ABIE41_RS03470at 722.018 kb on + strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 724.579 kb on + strandat 724.579 kb on + strandat 724.579 kb on + strandat 724.580 kb on - strandat 724.739 kb on - strand, within ABIE41_RS03480at 724.739 kb on - strand, within ABIE41_RS03480at 724.739 kb on - strand, within ABIE41_RS03480

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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721,625 + +0.7
721,625 + -0.4
721,625 + -0.4
721,626 - +0.0
721,626 - +0.4
721,626 - -0.4
721,665 + ABIE41_RS03470 0.12 +0.3
721,666 - ABIE41_RS03470 0.12 +0.3
721,691 + ABIE41_RS03470 0.16 +0.0
721,691 + ABIE41_RS03470 0.16 +0.1
721,691 + ABIE41_RS03470 0.16 -0.1
721,691 + ABIE41_RS03470 0.16 +0.1
721,691 + ABIE41_RS03470 0.16 -0.2
721,691 + ABIE41_RS03470 0.16 +0.1
721,691 + ABIE41_RS03470 0.16 -0.2
721,691 + ABIE41_RS03470 0.16 +1.9
721,691 + ABIE41_RS03470 0.16 -0.2
721,692 - ABIE41_RS03470 0.16 +0.8
721,692 - ABIE41_RS03470 0.16 +0.2
721,692 - ABIE41_RS03470 0.16 -0.3
721,692 - ABIE41_RS03470 0.16 +1.0
721,692 - ABIE41_RS03470 0.16 +0.6
721,692 - ABIE41_RS03470 0.16 -0.0
721,692 - ABIE41_RS03470 0.16 -0.7
721,752 + ABIE41_RS03470 0.25 +0.4
721,752 + ABIE41_RS03470 0.25 +0.1
721,752 + ABIE41_RS03470 0.25 +0.3
721,753 - ABIE41_RS03470 0.25 -0.3
721,754 + ABIE41_RS03470 0.25 -0.5
721,754 + ABIE41_RS03470 0.25 -0.0
721,755 - ABIE41_RS03470 0.26 -0.2
721,755 - ABIE41_RS03470 0.26 -0.2
721,755 - ABIE41_RS03470 0.26 -0.5
721,755 - ABIE41_RS03470 0.26 +0.2
721,784 + ABIE41_RS03470 0.30 -0.1
721,784 + ABIE41_RS03470 0.30 -0.1
721,784 + ABIE41_RS03470 0.30 +0.0
721,784 + ABIE41_RS03470 0.30 +0.2
721,784 + ABIE41_RS03470 0.30 +0.2
721,784 + ABIE41_RS03470 0.30 -0.7
721,784 + ABIE41_RS03470 0.30 -0.3
721,784 + ABIE41_RS03470 0.30 +0.2
721,784 + ABIE41_RS03470 0.30 +0.1
721,784 + ABIE41_RS03470 0.30 -0.3
721,784 + ABIE41_RS03470 0.30 +0.5
721,784 + ABIE41_RS03470 0.30 -0.2
721,785 - ABIE41_RS03470 0.30 +0.2
721,785 - ABIE41_RS03470 0.30 +1.7
721,785 - ABIE41_RS03470 0.30 +0.4
721,785 - ABIE41_RS03470 0.30 +0.4
721,785 - ABIE41_RS03470 0.30 +0.0
721,785 - ABIE41_RS03470 0.30 +0.2
721,785 - ABIE41_RS03470 0.30 -0.3
721,785 - ABIE41_RS03470 0.30 -0.3
722,003 + ABIE41_RS03470 0.64 +0.2
722,003 + ABIE41_RS03470 0.64 +0.3
722,003 + ABIE41_RS03470 0.64 +0.1
722,004 - ABIE41_RS03470 0.64 +0.7
722,004 - ABIE41_RS03470 0.64 -0.6
722,004 - ABIE41_RS03470 0.64 +0.2
722,018 + ABIE41_RS03470 0.67 -0.4
722,018 + ABIE41_RS03470 0.67 +0.1
722,019 - ABIE41_RS03470 0.67 -0.8
722,019 - ABIE41_RS03470 0.67 -0.6
722,019 - ABIE41_RS03470 0.67 -0.8
722,019 - ABIE41_RS03470 0.67 -1.8
722,019 - ABIE41_RS03470 0.67 -0.1
722,019 - ABIE41_RS03470 0.67 +0.6
722,019 - ABIE41_RS03470 0.67 -0.2
722,019 - ABIE41_RS03470 0.67 -0.6
724,579 + -0.5
724,579 + +0.3
724,579 + +0.2
724,580 - -0.5
724,739 - ABIE41_RS03480 0.20 -0.2
724,739 - ABIE41_RS03480 0.20 -0.9
724,739 - ABIE41_RS03480 0.20 -0.5

Or see this region's nucleotide sequence