Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03465

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS03455 and ABIE41_RS03460 overlap by 1 nucleotidesABIE41_RS03460 and ABIE41_RS03465 are separated by 7 nucleotidesABIE41_RS03465 and ABIE41_RS03470 are separated by 111 nucleotidesABIE41_RS03470 and ABIE41_RS03475 are separated by 36 nucleotides ABIE41_RS03455: ABIE41_RS03455 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 718,663 to 719,544 _RS03455 ABIE41_RS03460: ABIE41_RS03460 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 719,544 to 720,392 _RS03460 ABIE41_RS03465: ABIE41_RS03465 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 720,400 to 721,479 _RS03465 ABIE41_RS03470: ABIE41_RS03470 - thioredoxin family protein, at 721,591 to 722,232 _RS03470 ABIE41_RS03475: ABIE41_RS03475 - protein-disulfide reductase DsbD domain-containing protein, at 722,269 to 724,425 _RS03475 Position (kb) 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2at 719.410 kb on + strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.411 kb on - strand, within ABIE41_RS03455at 719.411 kb on - strand, within ABIE41_RS03455at 719.484 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.580 kb on + strandat 719.580 kb on + strandat 719.581 kb on - strandat 719.581 kb on - strandat 719.581 kb on - strandat 719.689 kb on - strand, within ABIE41_RS03460at 719.715 kb on + strand, within ABIE41_RS03460at 719.715 kb on + strand, within ABIE41_RS03460at 719.715 kb on + strand, within ABIE41_RS03460at 719.715 kb on + strand, within ABIE41_RS03460at 719.716 kb on - strand, within ABIE41_RS03460at 719.716 kb on - strand, within ABIE41_RS03460at 719.716 kb on - strand, within ABIE41_RS03460at 719.716 kb on - strand, within ABIE41_RS03460at 719.719 kb on - strand, within ABIE41_RS03460at 719.844 kb on + strand, within ABIE41_RS03460at 719.844 kb on + strand, within ABIE41_RS03460at 719.844 kb on + strand, within ABIE41_RS03460at 719.845 kb on - strand, within ABIE41_RS03460at 719.856 kb on + strand, within ABIE41_RS03460at 719.856 kb on + strand, within ABIE41_RS03460at 719.856 kb on + strand, within ABIE41_RS03460at 719.857 kb on - strand, within ABIE41_RS03460at 719.857 kb on - strand, within ABIE41_RS03460at 719.857 kb on - strand, within ABIE41_RS03460at 719.857 kb on - strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 720.174 kb on + strand, within ABIE41_RS03460at 720.174 kb on + strand, within ABIE41_RS03460at 720.174 kb on + strand, within ABIE41_RS03460at 720.175 kb on - strand, within ABIE41_RS03460at 720.175 kb on - strand, within ABIE41_RS03460at 720.189 kb on + strand, within ABIE41_RS03460at 720.190 kb on - strand, within ABIE41_RS03460at 720.190 kb on - strand, within ABIE41_RS03460at 720.390 kb on + strandat 720.390 kb on + strandat 720.390 kb on + strandat 720.391 kb on - strandat 720.391 kb on - strandat 720.392 kb on - strandat 720.411 kb on + strandat 720.412 kb on - strandat 720.412 kb on - strandat 720.412 kb on - strandat 720.436 kb on + strandat 720.437 kb on - strandat 720.437 kb on - strandat 720.661 kb on + strand, within ABIE41_RS03465at 720.661 kb on + strand, within ABIE41_RS03465at 720.661 kb on + strand, within ABIE41_RS03465at 720.669 kb on + strand, within ABIE41_RS03465at 720.669 kb on + strand, within ABIE41_RS03465at 720.669 kb on + strand, within ABIE41_RS03465at 720.670 kb on - strand, within ABIE41_RS03465at 720.670 kb on - strand, within ABIE41_RS03465at 720.670 kb on - strand, within ABIE41_RS03465at 720.670 kb on - strand, within ABIE41_RS03465at 720.670 kb on - strand, within ABIE41_RS03465at 720.670 kb on - strand, within ABIE41_RS03465at 720.679 kb on + strand, within ABIE41_RS03465at 720.679 kb on + strand, within ABIE41_RS03465at 720.694 kb on + strand, within ABIE41_RS03465at 720.695 kb on - strand, within ABIE41_RS03465at 720.695 kb on - strand, within ABIE41_RS03465at 720.695 kb on - strand, within ABIE41_RS03465at 720.695 kb on - strand, within ABIE41_RS03465at 720.967 kb on + strand, within ABIE41_RS03465at 720.967 kb on + strand, within ABIE41_RS03465at 720.967 kb on + strand, within ABIE41_RS03465at 720.967 kb on + strand, within ABIE41_RS03465at 720.968 kb on - strand, within ABIE41_RS03465at 720.968 kb on - strand, within ABIE41_RS03465at 721.066 kb on + strand, within ABIE41_RS03465at 721.066 kb on + strand, within ABIE41_RS03465at 721.067 kb on - strand, within ABIE41_RS03465at 721.067 kb on - strand, within ABIE41_RS03465at 721.067 kb on - strand, within ABIE41_RS03465at 721.067 kb on - strand, within ABIE41_RS03465at 721.067 kb on - strand, within ABIE41_RS03465at 721.091 kb on + strand, within ABIE41_RS03465at 721.092 kb on - strand, within ABIE41_RS03465at 721.092 kb on - strand, within ABIE41_RS03465at 721.625 kb on + strandat 721.625 kb on + strandat 721.625 kb on + strandat 721.626 kb on - strandat 721.626 kb on - strandat 721.626 kb on - strandat 721.665 kb on + strand, within ABIE41_RS03470at 721.666 kb on - strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.691 kb on + strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.692 kb on - strand, within ABIE41_RS03470at 721.752 kb on + strand, within ABIE41_RS03470at 721.752 kb on + strand, within ABIE41_RS03470at 721.752 kb on + strand, within ABIE41_RS03470at 721.753 kb on - strand, within ABIE41_RS03470at 721.754 kb on + strand, within ABIE41_RS03470at 721.754 kb on + strand, within ABIE41_RS03470at 721.755 kb on - strand, within ABIE41_RS03470at 721.755 kb on - strand, within ABIE41_RS03470at 721.755 kb on - strand, within ABIE41_RS03470at 721.755 kb on - strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.784 kb on + strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 721.785 kb on - strand, within ABIE41_RS03470at 722.003 kb on + strand, within ABIE41_RS03470at 722.003 kb on + strand, within ABIE41_RS03470at 722.003 kb on + strand, within ABIE41_RS03470at 722.004 kb on - strand, within ABIE41_RS03470at 722.004 kb on - strand, within ABIE41_RS03470at 722.004 kb on - strand, within ABIE41_RS03470at 722.018 kb on + strand, within ABIE41_RS03470at 722.018 kb on + strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470at 722.019 kb on - strand, within ABIE41_RS03470

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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719,410 + ABIE41_RS03455 0.85 -0.0
719,410 + ABIE41_RS03455 0.85 +0.0
719,410 + ABIE41_RS03455 0.85 +0.0
719,410 + ABIE41_RS03455 0.85 +1.2
719,411 - ABIE41_RS03455 0.85 -0.1
719,411 - ABIE41_RS03455 0.85 -0.1
719,484 + +0.1
719,539 + +0.2
719,539 + +1.0
719,539 + +0.5
719,539 + +1.1
719,539 + +0.2
719,539 + +0.3
719,540 - -0.2
719,540 - -0.3
719,540 - +0.3
719,540 - +0.3
719,540 - +0.3
719,580 + +0.4
719,580 + +0.1
719,581 - +1.2
719,581 - +0.2
719,581 - +0.0
719,689 - ABIE41_RS03460 0.17 +0.3
719,715 + ABIE41_RS03460 0.20 -0.1
719,715 + ABIE41_RS03460 0.20 +0.2
719,715 + ABIE41_RS03460 0.20 -0.3
719,715 + ABIE41_RS03460 0.20 -0.3
719,716 - ABIE41_RS03460 0.20 +1.7
719,716 - ABIE41_RS03460 0.20 +0.2
719,716 - ABIE41_RS03460 0.20 +0.6
719,716 - ABIE41_RS03460 0.20 +0.2
719,719 - ABIE41_RS03460 0.21 +1.2
719,844 + ABIE41_RS03460 0.35 -0.2
719,844 + ABIE41_RS03460 0.35 +0.4
719,844 + ABIE41_RS03460 0.35 +0.8
719,845 - ABIE41_RS03460 0.35 -0.3
719,856 + ABIE41_RS03460 0.37 +0.2
719,856 + ABIE41_RS03460 0.37 +1.2
719,856 + ABIE41_RS03460 0.37 -0.9
719,857 - ABIE41_RS03460 0.37 +0.2
719,857 - ABIE41_RS03460 0.37 +0.4
719,857 - ABIE41_RS03460 0.37 +0.7
719,857 - ABIE41_RS03460 0.37 -0.2
719,979 + ABIE41_RS03460 0.51 -1.7
719,979 + ABIE41_RS03460 0.51 +0.0
719,979 + ABIE41_RS03460 0.51 -0.4
719,979 + ABIE41_RS03460 0.51 +1.7
719,979 + ABIE41_RS03460 0.51 -0.5
719,979 + ABIE41_RS03460 0.51 +0.2
719,979 + ABIE41_RS03460 0.51 -0.0
719,979 + ABIE41_RS03460 0.51 +0.1
719,979 + ABIE41_RS03460 0.51 -0.0
719,980 - ABIE41_RS03460 0.51 -0.2
719,980 - ABIE41_RS03460 0.51 -0.3
719,980 - ABIE41_RS03460 0.51 -0.4
719,980 - ABIE41_RS03460 0.51 +0.2
719,980 - ABIE41_RS03460 0.51 +0.1
719,980 - ABIE41_RS03460 0.51 -0.7
719,980 - ABIE41_RS03460 0.51 +0.1
719,980 - ABIE41_RS03460 0.51 -0.5
719,980 - ABIE41_RS03460 0.51 -0.8
720,174 + ABIE41_RS03460 0.74 +1.2
720,174 + ABIE41_RS03460 0.74 +0.4
720,174 + ABIE41_RS03460 0.74 +0.1
720,175 - ABIE41_RS03460 0.74 -1.2
720,175 - ABIE41_RS03460 0.74 +0.3
720,189 + ABIE41_RS03460 0.76 -0.1
720,190 - ABIE41_RS03460 0.76 +0.1
720,190 - ABIE41_RS03460 0.76 -0.3
720,390 + +0.4
720,390 + +0.0
720,390 + -0.3
720,391 - -0.0
720,391 - -0.7
720,392 - +0.6
720,411 + +0.2
720,412 - +0.3
720,412 - -1.7
720,412 - -0.3
720,436 + -0.4
720,437 - +0.2
720,437 - +0.1
720,661 + ABIE41_RS03465 0.24 +0.6
720,661 + ABIE41_RS03465 0.24 +0.3
720,661 + ABIE41_RS03465 0.24 +0.1
720,669 + ABIE41_RS03465 0.25 +0.5
720,669 + ABIE41_RS03465 0.25 +0.1
720,669 + ABIE41_RS03465 0.25 -0.1
720,670 - ABIE41_RS03465 0.25 +0.4
720,670 - ABIE41_RS03465 0.25 +0.1
720,670 - ABIE41_RS03465 0.25 -0.1
720,670 - ABIE41_RS03465 0.25 +0.4
720,670 - ABIE41_RS03465 0.25 +0.2
720,670 - ABIE41_RS03465 0.25 -0.4
720,679 + ABIE41_RS03465 0.26 +0.2
720,679 + ABIE41_RS03465 0.26 -0.8
720,694 + ABIE41_RS03465 0.27 -0.3
720,695 - ABIE41_RS03465 0.27 -0.1
720,695 - ABIE41_RS03465 0.27 +0.6
720,695 - ABIE41_RS03465 0.27 +0.5
720,695 - ABIE41_RS03465 0.27 +0.0
720,967 + ABIE41_RS03465 0.53 -0.2
720,967 + ABIE41_RS03465 0.53 +0.8
720,967 + ABIE41_RS03465 0.53 +0.2
720,967 + ABIE41_RS03465 0.53 -0.4
720,968 - ABIE41_RS03465 0.53 -0.2
720,968 - ABIE41_RS03465 0.53 +0.4
721,066 + ABIE41_RS03465 0.62 +0.8
721,066 + ABIE41_RS03465 0.62 +0.1
721,067 - ABIE41_RS03465 0.62 +0.2
721,067 - ABIE41_RS03465 0.62 +0.7
721,067 - ABIE41_RS03465 0.62 -0.2
721,067 - ABIE41_RS03465 0.62 +0.0
721,067 - ABIE41_RS03465 0.62 -0.0
721,091 + ABIE41_RS03465 0.64 -0.0
721,092 - ABIE41_RS03465 0.64 -0.3
721,092 - ABIE41_RS03465 0.64 -0.2
721,625 + +0.7
721,625 + -0.4
721,625 + -0.4
721,626 - +0.0
721,626 - +0.4
721,626 - -0.4
721,665 + ABIE41_RS03470 0.12 +0.3
721,666 - ABIE41_RS03470 0.12 +0.3
721,691 + ABIE41_RS03470 0.16 +0.0
721,691 + ABIE41_RS03470 0.16 +0.1
721,691 + ABIE41_RS03470 0.16 -0.1
721,691 + ABIE41_RS03470 0.16 +0.1
721,691 + ABIE41_RS03470 0.16 -0.2
721,691 + ABIE41_RS03470 0.16 +0.1
721,691 + ABIE41_RS03470 0.16 -0.2
721,691 + ABIE41_RS03470 0.16 +1.9
721,691 + ABIE41_RS03470 0.16 -0.2
721,692 - ABIE41_RS03470 0.16 +0.8
721,692 - ABIE41_RS03470 0.16 +0.2
721,692 - ABIE41_RS03470 0.16 -0.3
721,692 - ABIE41_RS03470 0.16 +1.0
721,692 - ABIE41_RS03470 0.16 +0.6
721,692 - ABIE41_RS03470 0.16 -0.0
721,692 - ABIE41_RS03470 0.16 -0.7
721,752 + ABIE41_RS03470 0.25 +0.4
721,752 + ABIE41_RS03470 0.25 +0.1
721,752 + ABIE41_RS03470 0.25 +0.3
721,753 - ABIE41_RS03470 0.25 -0.3
721,754 + ABIE41_RS03470 0.25 -0.5
721,754 + ABIE41_RS03470 0.25 -0.0
721,755 - ABIE41_RS03470 0.26 -0.2
721,755 - ABIE41_RS03470 0.26 -0.2
721,755 - ABIE41_RS03470 0.26 -0.5
721,755 - ABIE41_RS03470 0.26 +0.2
721,784 + ABIE41_RS03470 0.30 -0.1
721,784 + ABIE41_RS03470 0.30 -0.1
721,784 + ABIE41_RS03470 0.30 +0.0
721,784 + ABIE41_RS03470 0.30 +0.2
721,784 + ABIE41_RS03470 0.30 +0.2
721,784 + ABIE41_RS03470 0.30 -0.7
721,784 + ABIE41_RS03470 0.30 -0.3
721,784 + ABIE41_RS03470 0.30 +0.2
721,784 + ABIE41_RS03470 0.30 +0.1
721,784 + ABIE41_RS03470 0.30 -0.3
721,784 + ABIE41_RS03470 0.30 +0.5
721,784 + ABIE41_RS03470 0.30 -0.2
721,785 - ABIE41_RS03470 0.30 +0.2
721,785 - ABIE41_RS03470 0.30 +1.7
721,785 - ABIE41_RS03470 0.30 +0.4
721,785 - ABIE41_RS03470 0.30 +0.4
721,785 - ABIE41_RS03470 0.30 +0.0
721,785 - ABIE41_RS03470 0.30 +0.2
721,785 - ABIE41_RS03470 0.30 -0.3
721,785 - ABIE41_RS03470 0.30 -0.3
722,003 + ABIE41_RS03470 0.64 +0.2
722,003 + ABIE41_RS03470 0.64 +0.3
722,003 + ABIE41_RS03470 0.64 +0.1
722,004 - ABIE41_RS03470 0.64 +0.7
722,004 - ABIE41_RS03470 0.64 -0.6
722,004 - ABIE41_RS03470 0.64 +0.2
722,018 + ABIE41_RS03470 0.67 -0.4
722,018 + ABIE41_RS03470 0.67 +0.1
722,019 - ABIE41_RS03470 0.67 -0.8
722,019 - ABIE41_RS03470 0.67 -0.6
722,019 - ABIE41_RS03470 0.67 -0.8
722,019 - ABIE41_RS03470 0.67 -1.8
722,019 - ABIE41_RS03470 0.67 -0.1
722,019 - ABIE41_RS03470 0.67 +0.6
722,019 - ABIE41_RS03470 0.67 -0.2
722,019 - ABIE41_RS03470 0.67 -0.6

Or see this region's nucleotide sequence