Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03450 and ABIE41_RS03455 are separated by 65 nucleotides ABIE41_RS03455 and ABIE41_RS03460 overlap by 1 nucleotides ABIE41_RS03460 and ABIE41_RS03465 are separated by 7 nucleotides
ABIE41_RS03450: ABIE41_RS03450 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 717,299 to 718,597
_RS03450
ABIE41_RS03455: ABIE41_RS03455 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 718,663 to 719,544
_RS03455
ABIE41_RS03460: ABIE41_RS03460 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 719,544 to 720,392
_RS03460
ABIE41_RS03465: ABIE41_RS03465 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 720,400 to 721,479
_RS03465
Position (kb) 719
720
721 Strain fitness (log2 ratio) -1
0
1 at 718.678 kb on + strand at 718.679 kb on - strand at 718.679 kb on - strand at 718.679 kb on - strand at 718.747 kb on + strand at 718.748 kb on - strand at 718.748 kb on - strand at 718.748 kb on - strand at 718.834 kb on + strand, within ABIE41_RS03455 at 718.834 kb on + strand, within ABIE41_RS03455 at 718.834 kb on + strand, within ABIE41_RS03455 at 718.834 kb on + strand, within ABIE41_RS03455 at 718.834 kb on + strand, within ABIE41_RS03455 at 718.834 kb on + strand, within ABIE41_RS03455 at 718.835 kb on - strand, within ABIE41_RS03455 at 718.835 kb on - strand, within ABIE41_RS03455 at 718.835 kb on - strand, within ABIE41_RS03455 at 718.978 kb on + strand, within ABIE41_RS03455 at 718.978 kb on + strand, within ABIE41_RS03455 at 718.979 kb on - strand, within ABIE41_RS03455 at 718.979 kb on - strand, within ABIE41_RS03455 at 718.979 kb on - strand, within ABIE41_RS03455 at 719.002 kb on + strand, within ABIE41_RS03455 at 719.003 kb on - strand, within ABIE41_RS03455 at 719.003 kb on - strand, within ABIE41_RS03455 at 719.174 kb on - strand, within ABIE41_RS03455 at 719.174 kb on - strand, within ABIE41_RS03455 at 719.333 kb on - strand, within ABIE41_RS03455 at 719.333 kb on - strand, within ABIE41_RS03455 at 719.333 kb on - strand, within ABIE41_RS03455 at 719.333 kb on - strand, within ABIE41_RS03455 at 719.410 kb on + strand, within ABIE41_RS03455 at 719.410 kb on + strand, within ABIE41_RS03455 at 719.410 kb on + strand, within ABIE41_RS03455 at 719.410 kb on + strand, within ABIE41_RS03455 at 719.411 kb on - strand, within ABIE41_RS03455 at 719.411 kb on - strand, within ABIE41_RS03455 at 719.484 kb on + strand at 719.539 kb on + strand at 719.539 kb on + strand at 719.539 kb on + strand at 719.539 kb on + strand at 719.539 kb on + strand at 719.539 kb on + strand at 719.540 kb on - strand at 719.540 kb on - strand at 719.540 kb on - strand at 719.540 kb on - strand at 719.540 kb on - strand at 719.580 kb on + strand at 719.580 kb on + strand at 719.581 kb on - strand at 719.581 kb on - strand at 719.581 kb on - strand at 719.689 kb on - strand, within ABIE41_RS03460 at 719.715 kb on + strand, within ABIE41_RS03460 at 719.715 kb on + strand, within ABIE41_RS03460 at 719.715 kb on + strand, within ABIE41_RS03460 at 719.715 kb on + strand, within ABIE41_RS03460 at 719.716 kb on - strand, within ABIE41_RS03460 at 719.716 kb on - strand, within ABIE41_RS03460 at 719.716 kb on - strand, within ABIE41_RS03460 at 719.716 kb on - strand, within ABIE41_RS03460 at 719.719 kb on - strand, within ABIE41_RS03460 at 719.844 kb on + strand, within ABIE41_RS03460 at 719.844 kb on + strand, within ABIE41_RS03460 at 719.844 kb on + strand, within ABIE41_RS03460 at 719.845 kb on - strand, within ABIE41_RS03460 at 719.856 kb on + strand, within ABIE41_RS03460 at 719.856 kb on + strand, within ABIE41_RS03460 at 719.856 kb on + strand, within ABIE41_RS03460 at 719.857 kb on - strand, within ABIE41_RS03460 at 719.857 kb on - strand, within ABIE41_RS03460 at 719.857 kb on - strand, within ABIE41_RS03460 at 719.857 kb on - strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 720.174 kb on + strand, within ABIE41_RS03460 at 720.174 kb on + strand, within ABIE41_RS03460 at 720.174 kb on + strand, within ABIE41_RS03460 at 720.175 kb on - strand, within ABIE41_RS03460 at 720.175 kb on - strand, within ABIE41_RS03460 at 720.189 kb on + strand, within ABIE41_RS03460 at 720.190 kb on - strand, within ABIE41_RS03460 at 720.190 kb on - strand, within ABIE41_RS03460 at 720.390 kb on + strand at 720.390 kb on + strand at 720.390 kb on + strand at 720.391 kb on - strand at 720.391 kb on - strand at 720.392 kb on - strand at 720.411 kb on + strand at 720.412 kb on - strand at 720.412 kb on - strand at 720.412 kb on - strand at 720.436 kb on + strand at 720.437 kb on - strand at 720.437 kb on - strand at 720.661 kb on + strand, within ABIE41_RS03465 at 720.661 kb on + strand, within ABIE41_RS03465 at 720.661 kb on + strand, within ABIE41_RS03465 at 720.669 kb on + strand, within ABIE41_RS03465 at 720.669 kb on + strand, within ABIE41_RS03465 at 720.669 kb on + strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.679 kb on + strand, within ABIE41_RS03465 at 720.679 kb on + strand, within ABIE41_RS03465 at 720.694 kb on + strand, within ABIE41_RS03465 at 720.695 kb on - strand, within ABIE41_RS03465 at 720.695 kb on - strand, within ABIE41_RS03465 at 720.695 kb on - strand, within ABIE41_RS03465 at 720.695 kb on - strand, within ABIE41_RS03465 at 720.967 kb on + strand, within ABIE41_RS03465 at 720.967 kb on + strand, within ABIE41_RS03465 at 720.967 kb on + strand, within ABIE41_RS03465 at 720.967 kb on + strand, within ABIE41_RS03465 at 720.968 kb on - strand, within ABIE41_RS03465 at 720.968 kb on - strand, within ABIE41_RS03465 at 721.066 kb on + strand, within ABIE41_RS03465 at 721.066 kb on + strand, within ABIE41_RS03465 at 721.067 kb on - strand, within ABIE41_RS03465 at 721.067 kb on - strand, within ABIE41_RS03465 at 721.067 kb on - strand, within ABIE41_RS03465 at 721.067 kb on - strand, within ABIE41_RS03465 at 721.067 kb on - strand, within ABIE41_RS03465 at 721.091 kb on + strand, within ABIE41_RS03465 at 721.092 kb on - strand, within ABIE41_RS03465 at 721.092 kb on - strand, within ABIE41_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 718,678 + +0.2 718,679 - -0.2 718,679 - +0.2 718,679 - +0.1 718,747 + -0.1 718,748 - +0.8 718,748 - -0.3 718,748 - -0.4 718,834 + ABIE41_RS03455 0.19 -1.4 718,834 + ABIE41_RS03455 0.19 -0.2 718,834 + ABIE41_RS03455 0.19 -0.1 718,834 + ABIE41_RS03455 0.19 +0.8 718,834 + ABIE41_RS03455 0.19 +0.0 718,834 + ABIE41_RS03455 0.19 +0.9 718,835 - ABIE41_RS03455 0.20 +0.5 718,835 - ABIE41_RS03455 0.20 +0.2 718,835 - ABIE41_RS03455 0.20 +0.1 718,978 + ABIE41_RS03455 0.36 -0.6 718,978 + ABIE41_RS03455 0.36 -0.1 718,979 - ABIE41_RS03455 0.36 +0.3 718,979 - ABIE41_RS03455 0.36 -0.1 718,979 - ABIE41_RS03455 0.36 +0.4 719,002 + ABIE41_RS03455 0.38 +1.2 719,003 - ABIE41_RS03455 0.39 -0.5 719,003 - ABIE41_RS03455 0.39 +0.4 719,174 - ABIE41_RS03455 0.58 +0.5 719,174 - ABIE41_RS03455 0.58 +0.2 719,333 - ABIE41_RS03455 0.76 -0.4 719,333 - ABIE41_RS03455 0.76 -0.0 719,333 - ABIE41_RS03455 0.76 -0.0 719,333 - ABIE41_RS03455 0.76 +0.6 719,410 + ABIE41_RS03455 0.85 -0.0 719,410 + ABIE41_RS03455 0.85 +0.0 719,410 + ABIE41_RS03455 0.85 +0.0 719,410 + ABIE41_RS03455 0.85 +1.2 719,411 - ABIE41_RS03455 0.85 -0.1 719,411 - ABIE41_RS03455 0.85 -0.1 719,484 + +0.1 719,539 + +0.2 719,539 + +1.0 719,539 + +0.5 719,539 + +1.1 719,539 + +0.2 719,539 + +0.3 719,540 - -0.2 719,540 - -0.3 719,540 - +0.3 719,540 - +0.3 719,540 - +0.3 719,580 + +0.4 719,580 + +0.1 719,581 - +1.2 719,581 - +0.2 719,581 - +0.0 719,689 - ABIE41_RS03460 0.17 +0.3 719,715 + ABIE41_RS03460 0.20 -0.1 719,715 + ABIE41_RS03460 0.20 +0.2 719,715 + ABIE41_RS03460 0.20 -0.3 719,715 + ABIE41_RS03460 0.20 -0.3 719,716 - ABIE41_RS03460 0.20 +1.7 719,716 - ABIE41_RS03460 0.20 +0.2 719,716 - ABIE41_RS03460 0.20 +0.6 719,716 - ABIE41_RS03460 0.20 +0.2 719,719 - ABIE41_RS03460 0.21 +1.2 719,844 + ABIE41_RS03460 0.35 -0.2 719,844 + ABIE41_RS03460 0.35 +0.4 719,844 + ABIE41_RS03460 0.35 +0.8 719,845 - ABIE41_RS03460 0.35 -0.3 719,856 + ABIE41_RS03460 0.37 +0.2 719,856 + ABIE41_RS03460 0.37 +1.2 719,856 + ABIE41_RS03460 0.37 -0.9 719,857 - ABIE41_RS03460 0.37 +0.2 719,857 - ABIE41_RS03460 0.37 +0.4 719,857 - ABIE41_RS03460 0.37 +0.7 719,857 - ABIE41_RS03460 0.37 -0.2 719,979 + ABIE41_RS03460 0.51 -1.7 719,979 + ABIE41_RS03460 0.51 +0.0 719,979 + ABIE41_RS03460 0.51 -0.4 719,979 + ABIE41_RS03460 0.51 +1.7 719,979 + ABIE41_RS03460 0.51 -0.5 719,979 + ABIE41_RS03460 0.51 +0.2 719,979 + ABIE41_RS03460 0.51 -0.0 719,979 + ABIE41_RS03460 0.51 +0.1 719,979 + ABIE41_RS03460 0.51 -0.0 719,980 - ABIE41_RS03460 0.51 -0.2 719,980 - ABIE41_RS03460 0.51 -0.3 719,980 - ABIE41_RS03460 0.51 -0.4 719,980 - ABIE41_RS03460 0.51 +0.2 719,980 - ABIE41_RS03460 0.51 +0.1 719,980 - ABIE41_RS03460 0.51 -0.7 719,980 - ABIE41_RS03460 0.51 +0.1 719,980 - ABIE41_RS03460 0.51 -0.5 719,980 - ABIE41_RS03460 0.51 -0.8 720,174 + ABIE41_RS03460 0.74 +1.2 720,174 + ABIE41_RS03460 0.74 +0.4 720,174 + ABIE41_RS03460 0.74 +0.1 720,175 - ABIE41_RS03460 0.74 -1.2 720,175 - ABIE41_RS03460 0.74 +0.3 720,189 + ABIE41_RS03460 0.76 -0.1 720,190 - ABIE41_RS03460 0.76 +0.1 720,190 - ABIE41_RS03460 0.76 -0.3 720,390 + +0.4 720,390 + +0.0 720,390 + -0.3 720,391 - -0.0 720,391 - -0.7 720,392 - +0.6 720,411 + +0.2 720,412 - +0.3 720,412 - -1.7 720,412 - -0.3 720,436 + -0.4 720,437 - +0.2 720,437 - +0.1 720,661 + ABIE41_RS03465 0.24 +0.6 720,661 + ABIE41_RS03465 0.24 +0.3 720,661 + ABIE41_RS03465 0.24 +0.1 720,669 + ABIE41_RS03465 0.25 +0.5 720,669 + ABIE41_RS03465 0.25 +0.1 720,669 + ABIE41_RS03465 0.25 -0.1 720,670 - ABIE41_RS03465 0.25 +0.4 720,670 - ABIE41_RS03465 0.25 +0.1 720,670 - ABIE41_RS03465 0.25 -0.1 720,670 - ABIE41_RS03465 0.25 +0.4 720,670 - ABIE41_RS03465 0.25 +0.2 720,670 - ABIE41_RS03465 0.25 -0.4 720,679 + ABIE41_RS03465 0.26 +0.2 720,679 + ABIE41_RS03465 0.26 -0.8 720,694 + ABIE41_RS03465 0.27 -0.3 720,695 - ABIE41_RS03465 0.27 -0.1 720,695 - ABIE41_RS03465 0.27 +0.6 720,695 - ABIE41_RS03465 0.27 +0.5 720,695 - ABIE41_RS03465 0.27 +0.0 720,967 + ABIE41_RS03465 0.53 -0.2 720,967 + ABIE41_RS03465 0.53 +0.8 720,967 + ABIE41_RS03465 0.53 +0.2 720,967 + ABIE41_RS03465 0.53 -0.4 720,968 - ABIE41_RS03465 0.53 -0.2 720,968 - ABIE41_RS03465 0.53 +0.4 721,066 + ABIE41_RS03465 0.62 +0.8 721,066 + ABIE41_RS03465 0.62 +0.1 721,067 - ABIE41_RS03465 0.62 +0.2 721,067 - ABIE41_RS03465 0.62 +0.7 721,067 - ABIE41_RS03465 0.62 -0.2 721,067 - ABIE41_RS03465 0.62 +0.0 721,067 - ABIE41_RS03465 0.62 -0.0 721,091 + ABIE41_RS03465 0.64 -0.0 721,092 - ABIE41_RS03465 0.64 -0.3 721,092 - ABIE41_RS03465 0.64 -0.2
Or see this region's nucleotide sequence