Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02865

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS02855 and ABIE41_RS02860 are separated by 5 nucleotidesABIE41_RS02860 and ABIE41_RS02865 are separated by 6 nucleotidesABIE41_RS02865 and ABIE41_RS02870 are separated by 27 nucleotides ABIE41_RS02855: ABIE41_RS02855 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 587,429 to 587,986 _RS02855 ABIE41_RS02860: ABIE41_RS02860 - dTDP-4-dehydrorhamnose reductase, at 587,992 to 588,885 _RS02860 ABIE41_RS02865: ABIE41_RS02865 - glucose-1-phosphate thymidylyltransferase RfbA, at 588,892 to 589,767 _RS02865 ABIE41_RS02870: ABIE41_RS02870 - rhamnan synthesis F family protein, at 589,795 to 590,646 _RS02870 Position (kb) 588 589 590Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 587.976 kb on - strandat 587.976 kb on - strandat 588.132 kb on - strand, within ABIE41_RS02860at 588.138 kb on + strand, within ABIE41_RS02860at 588.295 kb on + strand, within ABIE41_RS02860at 588.295 kb on + strand, within ABIE41_RS02860at 588.295 kb on + strand, within ABIE41_RS02860at 588.296 kb on - strand, within ABIE41_RS02860at 588.296 kb on - strand, within ABIE41_RS02860at 588.296 kb on - strand, within ABIE41_RS02860at 588.296 kb on - strand, within ABIE41_RS02860at 588.296 kb on - strand, within ABIE41_RS02860at 588.296 kb on - strand, within ABIE41_RS02860at 588.296 kb on - strand, within ABIE41_RS02860at 588.326 kb on - strand, within ABIE41_RS02860at 588.362 kb on - strand, within ABIE41_RS02860at 588.443 kb on - strand, within ABIE41_RS02860at 588.443 kb on - strand, within ABIE41_RS02860at 588.443 kb on - strand, within ABIE41_RS02860at 588.630 kb on + strand, within ABIE41_RS02860at 588.677 kb on + strand, within ABIE41_RS02860at 588.677 kb on + strand, within ABIE41_RS02860at 588.678 kb on - strand, within ABIE41_RS02860at 588.736 kb on + strand, within ABIE41_RS02860at 588.743 kb on - strand, within ABIE41_RS02860at 588.743 kb on - strand, within ABIE41_RS02860at 588.884 kb on - strandat 588.994 kb on + strand, within ABIE41_RS02865at 588.994 kb on + strand, within ABIE41_RS02865at 588.994 kb on + strand, within ABIE41_RS02865at 588.994 kb on + strand, within ABIE41_RS02865at 589.120 kb on + strand, within ABIE41_RS02865at 589.120 kb on + strand, within ABIE41_RS02865at 589.159 kb on + strand, within ABIE41_RS02865at 589.159 kb on + strand, within ABIE41_RS02865at 589.159 kb on + strand, within ABIE41_RS02865at 589.160 kb on - strand, within ABIE41_RS02865at 589.160 kb on - strand, within ABIE41_RS02865at 589.199 kb on + strand, within ABIE41_RS02865at 589.200 kb on - strand, within ABIE41_RS02865at 589.222 kb on + strand, within ABIE41_RS02865at 589.223 kb on - strand, within ABIE41_RS02865at 589.223 kb on - strand, within ABIE41_RS02865at 589.225 kb on + strand, within ABIE41_RS02865at 589.225 kb on + strand, within ABIE41_RS02865at 589.225 kb on + strand, within ABIE41_RS02865at 589.225 kb on + strand, within ABIE41_RS02865at 589.225 kb on + strand, within ABIE41_RS02865at 589.233 kb on + strand, within ABIE41_RS02865at 589.234 kb on - strand, within ABIE41_RS02865at 589.234 kb on - strand, within ABIE41_RS02865at 589.234 kb on - strand, within ABIE41_RS02865at 589.294 kb on + strand, within ABIE41_RS02865at 589.318 kb on + strand, within ABIE41_RS02865at 589.412 kb on - strand, within ABIE41_RS02865at 589.412 kb on - strand, within ABIE41_RS02865at 589.412 kb on - strand, within ABIE41_RS02865at 589.417 kb on + strand, within ABIE41_RS02865at 589.417 kb on + strand, within ABIE41_RS02865at 589.501 kb on + strand, within ABIE41_RS02865at 589.502 kb on - strand, within ABIE41_RS02865at 589.502 kb on - strand, within ABIE41_RS02865at 589.733 kb on - strandat 589.733 kb on - strandat 589.790 kb on + strandat 589.791 kb on - strandat 589.796 kb on + strandat 589.832 kb on + strandat 589.832 kb on + strandat 589.833 kb on - strandat 589.833 kb on - strandat 589.833 kb on - strandat 590.069 kb on + strand, within ABIE41_RS02870at 590.229 kb on + strand, within ABIE41_RS02870at 590.230 kb on - strand, within ABIE41_RS02870at 590.230 kb on - strand, within ABIE41_RS02870at 590.232 kb on + strand, within ABIE41_RS02870at 590.233 kb on - strand, within ABIE41_RS02870at 590.233 kb on - strand, within ABIE41_RS02870at 590.233 kb on - strand, within ABIE41_RS02870at 590.233 kb on - strand, within ABIE41_RS02870at 590.322 kb on - strand, within ABIE41_RS02870at 590.322 kb on - strand, within ABIE41_RS02870at 590.322 kb on - strand, within ABIE41_RS02870at 590.344 kb on + strand, within ABIE41_RS02870at 590.345 kb on - strand, within ABIE41_RS02870at 590.462 kb on + strand, within ABIE41_RS02870at 590.463 kb on - strand, within ABIE41_RS02870at 590.465 kb on + strand, within ABIE41_RS02870at 590.466 kb on - strand, within ABIE41_RS02870at 590.466 kb on - strand, within ABIE41_RS02870at 590.466 kb on - strand, within ABIE41_RS02870at 590.466 kb on - strand, within ABIE41_RS02870at 590.530 kb on + strand, within ABIE41_RS02870at 590.531 kb on - strand, within ABIE41_RS02870at 590.550 kb on + strand, within ABIE41_RS02870at 590.550 kb on + strand, within ABIE41_RS02870at 590.551 kb on - strand, within ABIE41_RS02870at 590.575 kb on + strandat 590.619 kb on + strandat 590.651 kb on - strandat 590.733 kb on + strandat 590.733 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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587,976 - -2.3
587,976 - -3.0
588,132 - ABIE41_RS02860 0.16 +0.4
588,138 + ABIE41_RS02860 0.16 +1.1
588,295 + ABIE41_RS02860 0.34 +0.4
588,295 + ABIE41_RS02860 0.34 -0.6
588,295 + ABIE41_RS02860 0.34 -0.4
588,296 - ABIE41_RS02860 0.34 -0.2
588,296 - ABIE41_RS02860 0.34 +0.1
588,296 - ABIE41_RS02860 0.34 +0.4
588,296 - ABIE41_RS02860 0.34 -0.9
588,296 - ABIE41_RS02860 0.34 -0.4
588,296 - ABIE41_RS02860 0.34 -0.3
588,296 - ABIE41_RS02860 0.34 -0.4
588,326 - ABIE41_RS02860 0.37 -0.7
588,362 - ABIE41_RS02860 0.41 -0.7
588,443 - ABIE41_RS02860 0.50 -0.3
588,443 - ABIE41_RS02860 0.50 -0.3
588,443 - ABIE41_RS02860 0.50 -0.4
588,630 + ABIE41_RS02860 0.71 -0.3
588,677 + ABIE41_RS02860 0.77 -0.3
588,677 + ABIE41_RS02860 0.77 +0.0
588,678 - ABIE41_RS02860 0.77 -0.4
588,736 + ABIE41_RS02860 0.83 -0.4
588,743 - ABIE41_RS02860 0.84 -0.9
588,743 - ABIE41_RS02860 0.84 -0.3
588,884 - -0.4
588,994 + ABIE41_RS02865 0.12 -0.2
588,994 + ABIE41_RS02865 0.12 -0.9
588,994 + ABIE41_RS02865 0.12 +0.9
588,994 + ABIE41_RS02865 0.12 -1.0
589,120 + ABIE41_RS02865 0.26 -0.1
589,120 + ABIE41_RS02865 0.26 -0.4
589,159 + ABIE41_RS02865 0.30 -0.7
589,159 + ABIE41_RS02865 0.30 -2.0
589,159 + ABIE41_RS02865 0.30 -0.0
589,160 - ABIE41_RS02865 0.31 -0.2
589,160 - ABIE41_RS02865 0.31 -0.2
589,199 + ABIE41_RS02865 0.35 -1.1
589,200 - ABIE41_RS02865 0.35 -0.4
589,222 + ABIE41_RS02865 0.38 -0.3
589,223 - ABIE41_RS02865 0.38 -0.9
589,223 - ABIE41_RS02865 0.38 -0.5
589,225 + ABIE41_RS02865 0.38 -1.1
589,225 + ABIE41_RS02865 0.38 -1.0
589,225 + ABIE41_RS02865 0.38 -0.4
589,225 + ABIE41_RS02865 0.38 -0.5
589,225 + ABIE41_RS02865 0.38 -2.2
589,233 + ABIE41_RS02865 0.39 -0.3
589,234 - ABIE41_RS02865 0.39 -1.0
589,234 - ABIE41_RS02865 0.39 -0.1
589,234 - ABIE41_RS02865 0.39 +0.0
589,294 + ABIE41_RS02865 0.46 -0.4
589,318 + ABIE41_RS02865 0.49 -0.4
589,412 - ABIE41_RS02865 0.59 -0.1
589,412 - ABIE41_RS02865 0.59 -0.3
589,412 - ABIE41_RS02865 0.59 +0.3
589,417 + ABIE41_RS02865 0.60 -1.4
589,417 + ABIE41_RS02865 0.60 -0.2
589,501 + ABIE41_RS02865 0.70 -1.6
589,502 - ABIE41_RS02865 0.70 -0.9
589,502 - ABIE41_RS02865 0.70 -0.4
589,733 - -0.6
589,733 - -0.7
589,790 + +1.1
589,791 - -0.2
589,796 + +0.4
589,832 + -3.4
589,832 + -3.1
589,833 - -3.8
589,833 - -1.4
589,833 - -0.4
590,069 + ABIE41_RS02870 0.32 -4.4
590,229 + ABIE41_RS02870 0.51 -4.7
590,230 - ABIE41_RS02870 0.51 -2.9
590,230 - ABIE41_RS02870 0.51 -3.6
590,232 + ABIE41_RS02870 0.51 -2.6
590,233 - ABIE41_RS02870 0.51 -4.9
590,233 - ABIE41_RS02870 0.51 -2.9
590,233 - ABIE41_RS02870 0.51 -3.2
590,233 - ABIE41_RS02870 0.51 -1.8
590,322 - ABIE41_RS02870 0.62 -2.7
590,322 - ABIE41_RS02870 0.62 -1.4
590,322 - ABIE41_RS02870 0.62 -4.0
590,344 + ABIE41_RS02870 0.64 -3.9
590,345 - ABIE41_RS02870 0.65 -1.2
590,462 + ABIE41_RS02870 0.78 -2.9
590,463 - ABIE41_RS02870 0.78 -2.4
590,465 + ABIE41_RS02870 0.79 -3.3
590,466 - ABIE41_RS02870 0.79 -4.9
590,466 - ABIE41_RS02870 0.79 -5.1
590,466 - ABIE41_RS02870 0.79 -1.4
590,466 - ABIE41_RS02870 0.79 -5.3
590,530 + ABIE41_RS02870 0.86 -2.6
590,531 - ABIE41_RS02870 0.86 -3.8
590,550 + ABIE41_RS02870 0.89 -1.2
590,550 + ABIE41_RS02870 0.89 -2.0
590,551 - ABIE41_RS02870 0.89 -1.4
590,575 + -5.4
590,619 + -4.5
590,651 - -5.2
590,733 + -2.4
590,733 + +1.7

Or see this region's nucleotide sequence