Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17805

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17800 and ABIE41_RS17805 are separated by 106 nucleotidesABIE41_RS17805 and ABIE41_RS17810 are separated by 43 nucleotides ABIE41_RS17800: ABIE41_RS17800 - DNA repair protein RadA, at 3,666,473 to 3,667,870 _RS17800 ABIE41_RS17805: ABIE41_RS17805 - CvpA family protein, at 3,667,977 to 3,668,660 _RS17805 ABIE41_RS17810: ABIE41_RS17810 - amidophosphoribosyltransferase, at 3,668,704 to 3,670,191 _RS17810 Position (kb) 3667 3668 3669Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3666.991 kb on - strand, within ABIE41_RS17800at 3667.086 kb on - strand, within ABIE41_RS17800at 3667.883 kb on - strandat 3667.908 kb on - strandat 3667.909 kb on + strandat 3668.145 kb on + strand, within ABIE41_RS17805at 3668.334 kb on + strand, within ABIE41_RS17805at 3668.617 kb on + strandat 3669.146 kb on - strand, within ABIE41_RS17810at 3669.254 kb on - strand, within ABIE41_RS17810at 3669.270 kb on + strand, within ABIE41_RS17810at 3669.270 kb on + strand, within ABIE41_RS17810at 3669.273 kb on + strand, within ABIE41_RS17810at 3669.499 kb on + strand, within ABIE41_RS17810at 3669.499 kb on + strand, within ABIE41_RS17810at 3669.499 kb on + strand, within ABIE41_RS17810at 3669.500 kb on - strand, within ABIE41_RS17810at 3669.500 kb on - strand, within ABIE41_RS17810at 3669.505 kb on + strand, within ABIE41_RS17810at 3669.548 kb on - strand, within ABIE41_RS17810at 3669.548 kb on - strand, within ABIE41_RS17810

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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3,666,991 - ABIE41_RS17800 0.37 -0.5
3,667,086 - ABIE41_RS17800 0.44 -2.0
3,667,883 - -0.0
3,667,908 - -1.2
3,667,909 + +0.0
3,668,145 + ABIE41_RS17805 0.25 -0.5
3,668,334 + ABIE41_RS17805 0.52 -2.1
3,668,617 + +0.7
3,669,146 - ABIE41_RS17810 0.30 -3.2
3,669,254 - ABIE41_RS17810 0.37 -4.2
3,669,270 + ABIE41_RS17810 0.38 -3.5
3,669,270 + ABIE41_RS17810 0.38 -2.7
3,669,273 + ABIE41_RS17810 0.38 -2.3
3,669,499 + ABIE41_RS17810 0.53 -3.0
3,669,499 + ABIE41_RS17810 0.53 -1.0
3,669,499 + ABIE41_RS17810 0.53 -1.5
3,669,500 - ABIE41_RS17810 0.53 -3.7
3,669,500 - ABIE41_RS17810 0.53 -4.3
3,669,505 + ABIE41_RS17810 0.54 -3.8
3,669,548 - ABIE41_RS17810 0.57 -2.6
3,669,548 - ABIE41_RS17810 0.57 -2.4

Or see this region's nucleotide sequence