Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08745

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08740 and ABIE41_RS08745 are separated by 10 nucleotidesABIE41_RS08745 and ABIE41_RS08750 are separated by 154 nucleotides ABIE41_RS08740: ABIE41_RS08740 - diaminopimelate decarboxylase, at 1,811,401 to 1,812,690 _RS08740 ABIE41_RS08745: ABIE41_RS08745 - lipoprotein, at 1,812,701 to 1,812,964 _RS08745 ABIE41_RS08750: ABIE41_RS08750 - argininosuccinate lyase, at 1,813,119 to 1,814,504 _RS08750 Position (kb) 1812 1813Strain fitness (log2 ratio) -1 0 1at 1813.017 kb on - strandat 1813.017 kb on - strandat 1813.121 kb on - strandat 1813.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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1,813,017 - +0.1
1,813,017 - -0.4
1,813,121 - +0.7
1,813,121 - -0.4

Or see this region's nucleotide sequence