Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08740

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08735 and ABIE41_RS08740 are separated by 177 nucleotidesABIE41_RS08740 and ABIE41_RS08745 are separated by 10 nucleotidesABIE41_RS08745 and ABIE41_RS08750 are separated by 154 nucleotides ABIE41_RS08735: ABIE41_RS08735 - TIGR02302 family protein, at 1,808,488 to 1,811,223 _RS08735 ABIE41_RS08740: ABIE41_RS08740 - diaminopimelate decarboxylase, at 1,811,401 to 1,812,690 _RS08740 ABIE41_RS08745: ABIE41_RS08745 - lipoprotein, at 1,812,701 to 1,812,964 _RS08745 ABIE41_RS08750: ABIE41_RS08750 - argininosuccinate lyase, at 1,813,119 to 1,814,504 _RS08750 Position (kb) 1811 1812 1813Strain fitness (log2 ratio) -2 -1 0 1at 1810.587 kb on + strand, within ABIE41_RS08735at 1810.589 kb on + strand, within ABIE41_RS08735at 1810.589 kb on + strand, within ABIE41_RS08735at 1811.305 kb on + strandat 1811.306 kb on - strandat 1811.306 kb on - strandat 1811.306 kb on - strandat 1813.017 kb on - strandat 1813.017 kb on - strandat 1813.121 kb on - strandat 1813.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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1,810,587 + ABIE41_RS08735 0.77 -1.3
1,810,589 + ABIE41_RS08735 0.77 -1.5
1,810,589 + ABIE41_RS08735 0.77 -2.1
1,811,305 + -0.3
1,811,306 - +0.1
1,811,306 - +0.6
1,811,306 - -0.6
1,813,017 - +0.1
1,813,017 - -0.4
1,813,121 - +0.7
1,813,121 - -0.4

Or see this region's nucleotide sequence