Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07260 and ABIE41_RS07265 are separated by 14 nucleotides ABIE41_RS07265 and ABIE41_RS07270 overlap by 4 nucleotides
ABIE41_RS07260: ABIE41_RS07260 - cobaltochelatase subunit CobS, at 1,497,642 to 1,498,628
_RS07260
ABIE41_RS07265: ABIE41_RS07265 - GNAT family N-acetyltransferase, at 1,498,643 to 1,499,059
_RS07265
ABIE41_RS07270: ABIE41_RS07270 - cobaltochelatase subunit CobT, at 1,499,056 to 1,500,958
_RS07270
Position (kb) 1498
1499
1500 Strain fitness (log2 ratio) -1
0
1 at 1498.712 kb on + strand, within ABIE41_RS07265 at 1498.712 kb on + strand, within ABIE41_RS07265 at 1498.712 kb on + strand, within ABIE41_RS07265 at 1498.712 kb on + strand, within ABIE41_RS07265 at 1498.712 kb on + strand, within ABIE41_RS07265 at 1498.712 kb on + strand, within ABIE41_RS07265 at 1498.713 kb on - strand, within ABIE41_RS07265 at 1498.713 kb on - strand, within ABIE41_RS07265 at 1498.713 kb on - strand, within ABIE41_RS07265 at 1498.713 kb on - strand, within ABIE41_RS07265 at 1498.714 kb on + strand, within ABIE41_RS07265 at 1498.714 kb on + strand, within ABIE41_RS07265 at 1498.934 kb on + strand, within ABIE41_RS07265 at 1498.934 kb on + strand, within ABIE41_RS07265 at 1498.934 kb on + strand, within ABIE41_RS07265 at 1498.935 kb on - strand, within ABIE41_RS07265 at 1498.942 kb on + strand, within ABIE41_RS07265 at 1498.942 kb on + strand, within ABIE41_RS07265 at 1498.943 kb on - strand, within ABIE41_RS07265 at 1498.943 kb on - strand, within ABIE41_RS07265 at 1498.971 kb on - strand, within ABIE41_RS07265 at 1499.055 kb on + strand at 1499.055 kb on + strand at 1499.055 kb on + strand at 1499.056 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 1,498,712 + ABIE41_RS07265 0.17 -0.5 1,498,712 + ABIE41_RS07265 0.17 -0.0 1,498,712 + ABIE41_RS07265 0.17 -0.6 1,498,712 + ABIE41_RS07265 0.17 -0.0 1,498,712 + ABIE41_RS07265 0.17 -0.4 1,498,712 + ABIE41_RS07265 0.17 -0.2 1,498,713 - ABIE41_RS07265 0.17 -0.0 1,498,713 - ABIE41_RS07265 0.17 -0.3 1,498,713 - ABIE41_RS07265 0.17 +0.2 1,498,713 - ABIE41_RS07265 0.17 -1.0 1,498,714 + ABIE41_RS07265 0.17 -0.4 1,498,714 + ABIE41_RS07265 0.17 +0.4 1,498,934 + ABIE41_RS07265 0.70 +0.2 1,498,934 + ABIE41_RS07265 0.70 -0.4 1,498,934 + ABIE41_RS07265 0.70 -0.1 1,498,935 - ABIE41_RS07265 0.70 -0.9 1,498,942 + ABIE41_RS07265 0.72 -0.4 1,498,942 + ABIE41_RS07265 0.72 +1.0 1,498,943 - ABIE41_RS07265 0.72 -1.2 1,498,943 - ABIE41_RS07265 0.72 -0.7 1,498,971 - ABIE41_RS07265 0.79 -0.8 1,499,055 + -0.7 1,499,055 + -0.5 1,499,055 + -0.4 1,499,056 - +0.3
Or see this region's nucleotide sequence