Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04335

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04330 and ABIE41_RS04335 overlap by 1 nucleotidesABIE41_RS04335 and ABIE41_RS04340 are separated by 40 nucleotides ABIE41_RS04330: ABIE41_RS04330 - Hsp33 family molecular chaperone, at 898,535 to 899,560 _RS04330 ABIE41_RS04335: ABIE41_RS04335 - ornithine carbamoyltransferase, at 899,560 to 900,480 _RS04335 ABIE41_RS04340: ABIE41_RS04340 - aspartate aminotransferase family protein, at 900,521 to 901,747 _RS04340 Position (kb) 899 900 901Strain fitness (log2 ratio) -2 -1 0 1 2at 898.584 kb on + strandat 898.584 kb on + strandat 898.610 kb on + strandat 898.765 kb on - strand, within ABIE41_RS04330at 899.064 kb on + strand, within ABIE41_RS04330at 899.064 kb on + strand, within ABIE41_RS04330at 899.065 kb on - strand, within ABIE41_RS04330at 899.065 kb on - strand, within ABIE41_RS04330at 900.523 kb on - strandat 900.523 kb on - strandat 900.523 kb on - strandat 900.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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898,584 + -0.9
898,584 + +0.3
898,610 + +1.8
898,765 - ABIE41_RS04330 0.22 -1.8
899,064 + ABIE41_RS04330 0.52 -2.1
899,064 + ABIE41_RS04330 0.52 -0.5
899,065 - ABIE41_RS04330 0.52 -1.6
899,065 - ABIE41_RS04330 0.52 -1.2
900,523 - +0.4
900,523 - +0.4
900,523 - -0.1
900,523 - -0.3

Or see this region's nucleotide sequence