Experiment: Glycocyamine 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04774 and PFR28_04775 overlap by 11 nucleotides PFR28_04775 and PFR28_04776 are separated by 206 nucleotides
PFR28_04774: PFR28_04774 - Protein FecR, at 5,436,339 to 5,437,328
_04774
PFR28_04775: PFR28_04775 - putative RNA polymerase sigma factor FecI, at 5,437,318 to 5,437,866
_04775
PFR28_04776: PFR28_04776 - Methyl-accepting chemotaxis protein McpA, at 5,438,073 to 5,439,953
_04776
Position (kb) 5437
5438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5436.384 kb on + strand at 5436.384 kb on + strand at 5436.384 kb on + strand at 5436.384 kb on + strand at 5436.384 kb on + strand at 5436.384 kb on + strand at 5436.385 kb on - strand at 5436.385 kb on - strand at 5436.385 kb on - strand at 5436.385 kb on - strand at 5436.493 kb on + strand, within PFR28_04774 at 5436.494 kb on - strand, within PFR28_04774 at 5436.631 kb on + strand, within PFR28_04774 at 5436.632 kb on - strand, within PFR28_04774 at 5436.790 kb on - strand, within PFR28_04774 at 5436.874 kb on + strand, within PFR28_04774 at 5436.874 kb on + strand, within PFR28_04774 at 5436.874 kb on + strand, within PFR28_04774 at 5436.874 kb on + strand, within PFR28_04774 at 5436.875 kb on - strand, within PFR28_04774 at 5436.875 kb on - strand, within PFR28_04774 at 5436.875 kb on - strand, within PFR28_04774 at 5436.875 kb on - strand, within PFR28_04774 at 5437.328 kb on + strand at 5437.329 kb on - strand at 5437.329 kb on - strand at 5437.340 kb on + strand at 5437.340 kb on + strand at 5437.340 kb on + strand at 5437.341 kb on - strand at 5437.341 kb on - strand at 5437.341 kb on - strand at 5437.349 kb on + strand at 5437.349 kb on + strand at 5437.350 kb on - strand at 5437.367 kb on + strand at 5437.367 kb on + strand at 5437.367 kb on + strand at 5437.367 kb on + strand at 5437.367 kb on + strand at 5437.367 kb on + strand at 5437.367 kb on + strand at 5437.367 kb on + strand at 5437.367 kb on + strand at 5437.367 kb on + strand at 5437.368 kb on - strand at 5437.368 kb on - strand at 5437.368 kb on - strand at 5437.368 kb on - strand at 5437.418 kb on + strand, within PFR28_04775 at 5437.577 kb on + strand, within PFR28_04775 at 5437.577 kb on + strand, within PFR28_04775 at 5437.577 kb on + strand, within PFR28_04775 at 5437.577 kb on + strand, within PFR28_04775 at 5437.578 kb on - strand, within PFR28_04775 at 5437.578 kb on - strand, within PFR28_04775 at 5437.578 kb on - strand, within PFR28_04775 at 5437.701 kb on + strand, within PFR28_04775 at 5437.702 kb on - strand, within PFR28_04775 at 5437.702 kb on - strand, within PFR28_04775 at 5437.758 kb on + strand, within PFR28_04775 at 5437.758 kb on + strand, within PFR28_04775 at 5437.758 kb on + strand, within PFR28_04775 at 5437.758 kb on + strand, within PFR28_04775 at 5437.784 kb on + strand, within PFR28_04775 at 5437.784 kb on + strand, within PFR28_04775 at 5437.784 kb on + strand, within PFR28_04775 at 5437.785 kb on - strand, within PFR28_04775 at 5437.785 kb on - strand, within PFR28_04775 at 5437.785 kb on - strand, within PFR28_04775 at 5437.785 kb on - strand, within PFR28_04775 at 5437.785 kb on - strand, within PFR28_04775 at 5437.928 kb on + strand at 5438.080 kb on + strand at 5438.081 kb on - strand at 5438.081 kb on - strand at 5438.093 kb on + strand at 5438.093 kb on + strand at 5438.093 kb on + strand at 5438.094 kb on - strand at 5438.094 kb on - strand at 5438.119 kb on + strand at 5438.119 kb on + strand at 5438.119 kb on + strand at 5438.119 kb on + strand at 5438.119 kb on + strand at 5438.119 kb on + strand at 5438.120 kb on - strand at 5438.120 kb on - strand at 5438.120 kb on - strand at 5438.120 kb on - strand at 5438.120 kb on - strand at 5438.122 kb on + strand at 5438.122 kb on + strand at 5438.122 kb on + strand at 5438.122 kb on + strand at 5438.122 kb on + strand at 5438.122 kb on + strand at 5438.122 kb on + strand at 5438.122 kb on + strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.123 kb on - strand at 5438.151 kb on + strand at 5438.152 kb on - strand at 5438.161 kb on - strand at 5438.161 kb on - strand at 5438.161 kb on - strand at 5438.161 kb on - strand at 5438.161 kb on - strand at 5438.367 kb on + strand, within PFR28_04776 at 5438.367 kb on + strand, within PFR28_04776 at 5438.368 kb on - strand, within PFR28_04776 at 5438.428 kb on - strand, within PFR28_04776 at 5438.451 kb on + strand, within PFR28_04776 at 5438.451 kb on + strand, within PFR28_04776 at 5438.452 kb on - strand, within PFR28_04776 at 5438.452 kb on - strand, within PFR28_04776 at 5438.496 kb on + strand, within PFR28_04776 at 5438.496 kb on + strand, within PFR28_04776 at 5438.496 kb on + strand, within PFR28_04776 at 5438.497 kb on - strand, within PFR28_04776 at 5438.497 kb on - strand, within PFR28_04776 at 5438.497 kb on - strand, within PFR28_04776 at 5438.497 kb on - strand, within PFR28_04776 at 5438.497 kb on - strand, within PFR28_04776 at 5438.497 kb on - strand, within PFR28_04776 at 5438.497 kb on - strand, within PFR28_04776 at 5438.497 kb on - strand, within PFR28_04776 at 5438.497 kb on - strand, within PFR28_04776 at 5438.498 kb on + strand, within PFR28_04776 at 5438.499 kb on - strand, within PFR28_04776 at 5438.721 kb on + strand, within PFR28_04776 at 5438.721 kb on + strand, within PFR28_04776 at 5438.721 kb on + strand, within PFR28_04776 at 5438.721 kb on + strand, within PFR28_04776 at 5438.722 kb on - strand, within PFR28_04776 at 5438.722 kb on - strand, within PFR28_04776 at 5438.722 kb on - strand, within PFR28_04776 at 5438.722 kb on - strand, within PFR28_04776 at 5438.832 kb on + strand, within PFR28_04776 at 5438.832 kb on + strand, within PFR28_04776 at 5438.832 kb on + strand, within PFR28_04776 at 5438.833 kb on - strand, within PFR28_04776 at 5438.833 kb on - strand, within PFR28_04776 at 5438.833 kb on - strand, within PFR28_04776 at 5438.833 kb on - strand, within PFR28_04776 at 5438.833 kb on - strand, within PFR28_04776 at 5438.833 kb on - strand, within PFR28_04776 at 5438.865 kb on + strand, within PFR28_04776 at 5438.865 kb on + strand, within PFR28_04776 at 5438.865 kb on + strand, within PFR28_04776 at 5438.865 kb on + strand, within PFR28_04776 at 5438.865 kb on + strand, within PFR28_04776 at 5438.866 kb on - strand, within PFR28_04776 at 5438.866 kb on - strand, within PFR28_04776 at 5438.866 kb on - strand, within PFR28_04776
Per-strain Table
Position Strand Gene LocusTag Fraction Glycocyamine 20 mM (C) remove 5,436,384 + -1.1 5,436,384 + +0.0 5,436,384 + +0.3 5,436,384 + -0.1 5,436,384 + -0.1 5,436,384 + -0.8 5,436,385 - -1.3 5,436,385 - -1.0 5,436,385 - +0.6 5,436,385 - +0.4 5,436,493 + PFR28_04774 0.16 -0.6 5,436,494 - PFR28_04774 0.16 -0.0 5,436,631 + PFR28_04774 0.29 +0.2 5,436,632 - PFR28_04774 0.30 -1.2 5,436,790 - PFR28_04774 0.46 +0.1 5,436,874 + PFR28_04774 0.54 -1.3 5,436,874 + PFR28_04774 0.54 +0.8 5,436,874 + PFR28_04774 0.54 -0.4 5,436,874 + PFR28_04774 0.54 -0.2 5,436,875 - PFR28_04774 0.54 +1.3 5,436,875 - PFR28_04774 0.54 -2.8 5,436,875 - PFR28_04774 0.54 +0.4 5,436,875 - PFR28_04774 0.54 +1.0 5,437,328 + +1.0 5,437,329 - +1.0 5,437,329 - -1.7 5,437,340 + -0.2 5,437,340 + +1.3 5,437,340 + -1.4 5,437,341 - -0.8 5,437,341 - -0.4 5,437,341 - -0.1 5,437,349 + -0.3 5,437,349 + -0.6 5,437,350 - -2.6 5,437,367 + +0.4 5,437,367 + -0.7 5,437,367 + +1.0 5,437,367 + -1.6 5,437,367 + +1.2 5,437,367 + +0.4 5,437,367 + -1.1 5,437,367 + -0.7 5,437,367 + -0.3 5,437,367 + +0.3 5,437,368 - -0.6 5,437,368 - +0.3 5,437,368 - -0.8 5,437,368 - -0.6 5,437,418 + PFR28_04775 0.18 +0.9 5,437,577 + PFR28_04775 0.47 -0.6 5,437,577 + PFR28_04775 0.47 -1.3 5,437,577 + PFR28_04775 0.47 -0.4 5,437,577 + PFR28_04775 0.47 +0.4 5,437,578 - PFR28_04775 0.47 +2.0 5,437,578 - PFR28_04775 0.47 -0.8 5,437,578 - PFR28_04775 0.47 +0.9 5,437,701 + PFR28_04775 0.70 +1.0 5,437,702 - PFR28_04775 0.70 +0.4 5,437,702 - PFR28_04775 0.70 -1.7 5,437,758 + PFR28_04775 0.80 +0.8 5,437,758 + PFR28_04775 0.80 -1.6 5,437,758 + PFR28_04775 0.80 +0.4 5,437,758 + PFR28_04775 0.80 -0.4 5,437,784 + PFR28_04775 0.85 -2.4 5,437,784 + PFR28_04775 0.85 +1.0 5,437,784 + PFR28_04775 0.85 -0.5 5,437,785 - PFR28_04775 0.85 +2.6 5,437,785 - PFR28_04775 0.85 -0.4 5,437,785 - PFR28_04775 0.85 +0.9 5,437,785 - PFR28_04775 0.85 +0.4 5,437,785 - PFR28_04775 0.85 -1.3 5,437,928 + -0.7 5,438,080 + -1.6 5,438,081 - +0.1 5,438,081 - -0.3 5,438,093 + +0.4 5,438,093 + +0.4 5,438,093 + -0.6 5,438,094 - +0.4 5,438,094 - +0.4 5,438,119 + +0.7 5,438,119 + -0.6 5,438,119 + +0.1 5,438,119 + -0.3 5,438,119 + -0.5 5,438,119 + +1.0 5,438,120 - +0.8 5,438,120 - -0.5 5,438,120 - -0.3 5,438,120 - -0.4 5,438,120 - -0.3 5,438,122 + -0.2 5,438,122 + -2.4 5,438,122 + -0.4 5,438,122 + -2.1 5,438,122 + -0.6 5,438,122 + -0.8 5,438,122 + -1.1 5,438,122 + -0.4 5,438,123 - +1.4 5,438,123 - -0.8 5,438,123 - +0.1 5,438,123 - +0.4 5,438,123 - +1.0 5,438,123 - -0.8 5,438,123 - -0.2 5,438,123 - -0.8 5,438,123 - -1.0 5,438,123 - +0.4 5,438,123 - -0.1 5,438,123 - +0.9 5,438,151 + +1.4 5,438,152 - -0.2 5,438,161 - -0.9 5,438,161 - +0.0 5,438,161 - -0.6 5,438,161 - -0.6 5,438,161 - +0.7 5,438,367 + PFR28_04776 0.16 -1.4 5,438,367 + PFR28_04776 0.16 -0.9 5,438,368 - PFR28_04776 0.16 -0.7 5,438,428 - PFR28_04776 0.19 +0.5 5,438,451 + PFR28_04776 0.20 +2.0 5,438,451 + PFR28_04776 0.20 -0.9 5,438,452 - PFR28_04776 0.20 -0.0 5,438,452 - PFR28_04776 0.20 -0.1 5,438,496 + PFR28_04776 0.22 -0.9 5,438,496 + PFR28_04776 0.22 -0.0 5,438,496 + PFR28_04776 0.22 -0.7 5,438,497 - PFR28_04776 0.23 +0.6 5,438,497 - PFR28_04776 0.23 -1.2 5,438,497 - PFR28_04776 0.23 -1.6 5,438,497 - PFR28_04776 0.23 +0.7 5,438,497 - PFR28_04776 0.23 -0.0 5,438,497 - PFR28_04776 0.23 +0.0 5,438,497 - PFR28_04776 0.23 -0.9 5,438,497 - PFR28_04776 0.23 +0.8 5,438,497 - PFR28_04776 0.23 +0.4 5,438,498 + PFR28_04776 0.23 -0.3 5,438,499 - PFR28_04776 0.23 -0.1 5,438,721 + PFR28_04776 0.34 -0.1 5,438,721 + PFR28_04776 0.34 -0.3 5,438,721 + PFR28_04776 0.34 +0.3 5,438,721 + PFR28_04776 0.34 +0.2 5,438,722 - PFR28_04776 0.35 -0.1 5,438,722 - PFR28_04776 0.35 -0.2 5,438,722 - PFR28_04776 0.35 +0.6 5,438,722 - PFR28_04776 0.35 -0.5 5,438,832 + PFR28_04776 0.40 +0.9 5,438,832 + PFR28_04776 0.40 -0.4 5,438,832 + PFR28_04776 0.40 +0.6 5,438,833 - PFR28_04776 0.40 +0.2 5,438,833 - PFR28_04776 0.40 +0.3 5,438,833 - PFR28_04776 0.40 +1.0 5,438,833 - PFR28_04776 0.40 +0.0 5,438,833 - PFR28_04776 0.40 -0.1 5,438,833 - PFR28_04776 0.40 -0.1 5,438,865 + PFR28_04776 0.42 -1.9 5,438,865 + PFR28_04776 0.42 -0.1 5,438,865 + PFR28_04776 0.42 +1.0 5,438,865 + PFR28_04776 0.42 -1.7 5,438,865 + PFR28_04776 0.42 -0.6 5,438,866 - PFR28_04776 0.42 -2.0 5,438,866 - PFR28_04776 0.42 +0.0 5,438,866 - PFR28_04776 0.42 +0.4
Or see this region's nucleotide sequence