Strain Fitness in Pseudomonas sp. RS175 around PFR28_04773

Experiment: Glycocyamine 20 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycocyamine 20 mM (C)
5,432,770	+		PFR28_04772	0.27	-0.6
5,432,771	-		PFR28_04772	0.27	-0.7
5,432,885	+		PFR28_04772	0.37	-0.9
5,433,055	+		PFR28_04772	0.53	-0.0
5,433,055	+		PFR28_04772	0.53	+0.1
5,433,055	+		PFR28_04772	0.53	+0.5
5,433,055	+		PFR28_04772	0.53	-0.6
5,433,055	+		PFR28_04772	0.53	+0.6
5,433,055	+		PFR28_04772	0.53	-1.0
5,433,056	-		PFR28_04772	0.53	-0.1
5,433,056	-		PFR28_04772	0.53	-0.3
5,433,056	-		PFR28_04772	0.53	+0.7
5,433,056	-		PFR28_04772	0.53	-0.9
5,433,091	+		PFR28_04772	0.56	-0.3
5,433,091	+		PFR28_04772	0.56	+0.2
5,433,091	+		PFR28_04772	0.56	-0.1
5,433,091	+		PFR28_04772	0.56	-1.9
5,433,091	+		PFR28_04772	0.56	-0.2
5,433,091	+		PFR28_04772	0.56	-1.1
5,433,092	-		PFR28_04772	0.57	-1.0
5,433,092	-		PFR28_04772	0.57	-1.0
5,433,092	-		PFR28_04772	0.57	-1.3
5,433,092	-		PFR28_04772	0.57	+0.3
5,433,141	+		PFR28_04772	0.61	-0.4
5,433,141	+		PFR28_04772	0.61	-0.6
5,433,142	-		PFR28_04772	0.61	-0.3
5,433,224	+		PFR28_04772	0.69	-3.6
5,433,225	-		PFR28_04772	0.69	-1.9
5,433,225	-		PFR28_04772	0.69	+4.0
5,433,225	-		PFR28_04772	0.69	-0.5
5,433,225	-		PFR28_04772	0.69	+0.4
5,433,225	-		PFR28_04772	0.69	-0.7
5,433,225	-		PFR28_04772	0.69	-0.1
5,433,225	-		PFR28_04772	0.69	-0.2
5,433,231	+		PFR28_04772	0.69	+0.8
5,433,231	+		PFR28_04772	0.69	+0.7
5,433,232	-		PFR28_04772	0.70	-1.3
5,433,269	-		PFR28_04772	0.73	+0.2
5,433,269	-		PFR28_04772	0.73	+1.3
5,433,269	-		PFR28_04772	0.73	-2.0
5,433,269	-		PFR28_04772	0.73	+2.6
5,433,272	-		PFR28_04772	0.73	-1.4
5,433,369	+		PFR28_04772	0.82	-1.2
5,433,370	-		PFR28_04772	0.82	-0.5
5,433,370	-		PFR28_04772	0.82	+0.7
5,433,370	-		PFR28_04772	0.82	-0.6
5,433,409	+		PFR28_04772	0.86	+0.9
5,433,409	+		PFR28_04772	0.86	+0.7
5,433,409	+		PFR28_04772	0.86	-2.5
5,433,409	+		PFR28_04772	0.86	+0.2
5,433,409	+		PFR28_04772	0.86	-0.2
5,433,409	+		PFR28_04772	0.86	-0.0
5,433,409	+		PFR28_04772	0.86	+2.0
5,433,410	-		PFR28_04772	0.86	+0.0
5,433,410	-		PFR28_04772	0.86	-1.9
5,433,410	-		PFR28_04772	0.86	-0.2
5,433,410	-		PFR28_04772	0.86	-0.7
5,433,410	-		PFR28_04772	0.86	+1.2
5,433,604	+				+0.2
5,433,604	+				-0.2
5,433,706	-				-0.5
5,433,763	-				+1.3
5,433,797	+				-0.1
5,433,797	+				+1.0
5,433,797	+				-1.2
5,433,797	+				+0.2
5,433,798	-				-0.6
5,433,798	-				-0.5
5,433,798	-				-0.6
5,433,801	+				-1.2
5,433,801	+				-0.8
5,433,801	+				-0.1
5,433,801	+				+0.0
5,433,801	+				+0.2
5,433,801	+				-0.1
5,433,801	+				-0.1
5,433,801	+				-1.3
5,433,801	+				+0.1
5,433,802	-				+0.6
5,433,802	-				-2.8
5,433,802	-				-0.8
5,433,802	-				-0.2
5,433,802	-				-1.1
5,433,802	-				-0.1
5,433,807	+				+1.0
5,433,834	+				-0.3
5,433,834	+				-0.5
5,433,834	+				+0.4
5,433,834	+				-0.4
5,433,835	-				+0.2
5,433,933	+				-0.9
5,433,933	+				-1.7
5,433,934	-				-2.7
5,433,984	+				+0.8
5,433,984	+				-1.2
5,433,984	+				-0.7
5,433,984	+				+0.1
5,433,985	-				-1.0
5,433,985	-				-0.2
5,434,039	-		PFR28_04773	0.11	+0.7
5,434,117	+		PFR28_04773	0.15	-1.0
5,434,167	+		PFR28_04773	0.17	+0.7
5,434,167	+		PFR28_04773	0.17	+2.6
5,434,167	+		PFR28_04773	0.17	+0.7
5,434,167	+		PFR28_04773	0.17	-0.8
5,434,168	-		PFR28_04773	0.17	+0.0
5,434,168	-		PFR28_04773	0.17	+0.4
5,434,168	-		PFR28_04773	0.17	+0.8
5,434,254	+		PFR28_04773	0.20	-0.2
5,434,255	-		PFR28_04773	0.20	-0.2
5,434,320	+		PFR28_04773	0.23	-0.3
5,434,321	-		PFR28_04773	0.23	-0.6
5,434,321	-		PFR28_04773	0.23	-2.5
5,434,321	-		PFR28_04773	0.23	+0.4
5,434,321	-		PFR28_04773	0.23	-2.0
5,434,321	-		PFR28_04773	0.23	-0.6
5,434,347	+		PFR28_04773	0.24	+0.5
5,434,440	+		PFR28_04773	0.27	-0.5
5,434,441	-		PFR28_04773	0.28	+0.7
5,434,449	+		PFR28_04773	0.28	-0.5
5,434,449	+		PFR28_04773	0.28	+1.0
5,434,450	-		PFR28_04773	0.28	+0.1
5,434,450	-		PFR28_04773	0.28	-0.8
5,434,476	+		PFR28_04773	0.29	-0.5
5,434,476	+		PFR28_04773	0.29	-0.4
5,434,476	+		PFR28_04773	0.29	+0.4
5,434,476	+		PFR28_04773	0.29	+1.0
5,434,476	+		PFR28_04773	0.29	-0.3
5,434,476	+		PFR28_04773	0.29	-0.3
5,434,477	-		PFR28_04773	0.29	+1.0
5,434,477	-		PFR28_04773	0.29	+2.6
5,434,477	-		PFR28_04773	0.29	-2.2
5,434,477	-		PFR28_04773	0.29	+0.1
5,434,477	-		PFR28_04773	0.29	-0.7
5,434,477	-		PFR28_04773	0.29	-1.4
5,434,477	-		PFR28_04773	0.29	-1.6
5,434,477	-		PFR28_04773	0.29	-0.7
5,434,599	-		PFR28_04773	0.34	-1.4
5,434,641	+		PFR28_04773	0.36	+0.2
5,434,671	+		PFR28_04773	0.37	-1.7
5,434,671	+		PFR28_04773	0.37	-0.5
5,434,672	-		PFR28_04773	0.37	-0.9
5,434,672	-		PFR28_04773	0.37	+0.4
5,434,689	+		PFR28_04773	0.37	-1.0
5,434,689	+		PFR28_04773	0.37	-1.0
5,434,689	+		PFR28_04773	0.37	-2.6
5,434,690	-		PFR28_04773	0.37	-1.1
5,434,690	-		PFR28_04773	0.37	-0.1
5,434,690	-		PFR28_04773	0.37	-0.2
5,434,887	+		PFR28_04773	0.45	-0.4
5,434,887	+		PFR28_04773	0.45	-0.3
5,434,887	+		PFR28_04773	0.45	+0.1
5,434,888	-		PFR28_04773	0.45	-0.0
5,434,888	-		PFR28_04773	0.45	+0.4
5,434,888	-		PFR28_04773	0.45	-0.1
5,434,888	-		PFR28_04773	0.45	-0.6
5,434,890	+		PFR28_04773	0.45	+0.4
5,434,890	+		PFR28_04773	0.45	+1.4
5,434,891	-		PFR28_04773	0.46	+1.2
5,434,891	-		PFR28_04773	0.46	+0.7
5,434,891	-		PFR28_04773	0.46	-0.2
5,434,891	-		PFR28_04773	0.46	-1.0
5,434,935	+		PFR28_04773	0.47	+0.6
5,434,935	+		PFR28_04773	0.47	+0.6
5,434,935	+		PFR28_04773	0.47	-1.2
5,434,936	-		PFR28_04773	0.47	-0.8
5,434,936	-		PFR28_04773	0.47	-1.2
5,434,936	-		PFR28_04773	0.47	-0.7
5,434,936	-		PFR28_04773	0.47	-1.2
5,435,049	+		PFR28_04773	0.52	-1.0
5,435,049	+		PFR28_04773	0.52	+0.0
5,435,049	+		PFR28_04773	0.52	-0.5
5,435,050	-		PFR28_04773	0.52	-0.4
5,435,050	-		PFR28_04773	0.52	+2.0
5,435,172	+		PFR28_04773	0.57	+0.4
5,435,172	+		PFR28_04773	0.57	-0.2
5,435,173	-		PFR28_04773	0.57	-0.6
5,435,173	-		PFR28_04773	0.57	-0.7
5,435,173	-		PFR28_04773	0.57	+1.6
5,435,252	-		PFR28_04773	0.60	-0.2
5,435,391	+		PFR28_04773	0.66	+0.1
5,435,391	+		PFR28_04773	0.66	+0.3
5,435,392	-		PFR28_04773	0.66	-1.0
5,435,392	-		PFR28_04773	0.66	+0.4
5,435,392	-		PFR28_04773	0.66	-1.2
5,435,392	-		PFR28_04773	0.66	+0.4
5,435,400	+		PFR28_04773	0.66	-1.3
5,435,400	+		PFR28_04773	0.66	+0.4
5,435,401	-		PFR28_04773	0.66	+1.0
5,435,401	-		PFR28_04773	0.66	-1.8
5,435,401	-		PFR28_04773	0.66	+1.3
5,435,401	-		PFR28_04773	0.66	-0.9
5,435,454	+		PFR28_04773	0.68	-1.1
5,435,454	+		PFR28_04773	0.68	+0.8
5,435,454	+		PFR28_04773	0.68	-0.8
5,435,502	+		PFR28_04773	0.70	+0.7
5,435,502	+		PFR28_04773	0.70	-0.8
5,435,502	+		PFR28_04773	0.70	+0.4
5,435,526	+		PFR28_04773	0.71	-1.6
5,435,526	+		PFR28_04773	0.71	-0.2
5,435,526	+		PFR28_04773	0.71	-0.2
5,435,526	+		PFR28_04773	0.71	+1.3
5,435,526	+		PFR28_04773	0.71	+0.9
5,435,527	-		PFR28_04773	0.71	-0.6
5,435,527	-		PFR28_04773	0.71	-0.4
5,435,527	-		PFR28_04773	0.71	-1.7
5,435,527	-		PFR28_04773	0.71	+0.3
5,435,527	-		PFR28_04773	0.71	-1.5
5,435,527	-		PFR28_04773	0.71	+0.1
5,435,565	+		PFR28_04773	0.72	-1.7
5,435,565	+		PFR28_04773	0.72	+1.0
5,435,565	+		PFR28_04773	0.72	+1.3
5,435,565	+		PFR28_04773	0.72	-0.3
5,435,566	-		PFR28_04773	0.73	-1.2
5,435,566	-		PFR28_04773	0.73	-0.6
5,435,566	-		PFR28_04773	0.73	+1.3
5,435,610	+		PFR28_04773	0.74	-0.1
5,435,610	+		PFR28_04773	0.74	-0.6
5,435,610	+		PFR28_04773	0.74	-0.3
5,435,611	-		PFR28_04773	0.74	+0.4
5,435,617	-		PFR28_04773	0.75	-1.3
5,435,648	+		PFR28_04773	0.76	-0.5
5,435,649	-		PFR28_04773	0.76	-1.2
5,435,649	-		PFR28_04773	0.76	+0.2
5,435,649	-		PFR28_04773	0.76	+0.6
5,435,660	-		PFR28_04773	0.76	+0.1
5,435,660	-		PFR28_04773	0.76	+0.2
5,435,793	+		PFR28_04773	0.82	+0.1
5,435,793	+		PFR28_04773	0.82	+0.8
5,435,793	+		PFR28_04773	0.82	+0.0
5,435,794	-		PFR28_04773	0.82	-0.8
5,435,794	-		PFR28_04773	0.82	+0.4
5,435,794	-		PFR28_04773	0.82	-0.7
5,435,794	-		PFR28_04773	0.82	-0.2
5,435,892	+		PFR28_04773	0.86	-1.9
5,435,892	+		PFR28_04773	0.86	+0.3
5,435,892	+		PFR28_04773	0.86	+0.7
5,435,892	+		PFR28_04773	0.86	+0.0
5,435,892	+		PFR28_04773	0.86	-0.3
5,435,892	+		PFR28_04773	0.86	-0.2
5,435,892	+		PFR28_04773	0.86	-0.5
5,435,892	+		PFR28_04773	0.86	-0.5
5,435,892	+		PFR28_04773	0.86	-0.1
5,435,892	+		PFR28_04773	0.86	-1.7
5,435,892	+		PFR28_04773	0.86	-0.9
5,435,893	-		PFR28_04773	0.86	-1.9
5,435,893	-		PFR28_04773	0.86	+0.2
5,435,893	-		PFR28_04773	0.86	-0.5
5,436,090	+				+0.4
5,436,090	+				+0.8
5,436,090	+				-0.2
5,436,090	+				+0.5
5,436,090	+				-1.2
5,436,090	+				-1.0
5,436,091	-				-0.6
5,436,091	-				-0.3
5,436,091	-				-0.1
5,436,091	-				-1.1
5,436,091	-				-0.5
5,436,091	-				-0.2
5,436,171	-				+0.0
5,436,239	+				+0.0
5,436,240	-				+0.4
5,436,240	-				-1.5
5,436,240	-				-0.0
5,436,240	-				-0.8
5,436,255	+				+3.0
5,436,256	-				+1.1
5,436,256	-				+0.8
5,436,298	+				-0.9
5,436,298	+				-0.2
5,436,298	+				-0.4
5,436,298	+				-0.5
5,436,298	+				+0.0
5,436,299	-				-0.1
5,436,299	-				+0.7
5,436,299	-				+0.9
5,436,384	+				-1.1
5,436,384	+				+0.0
5,436,384	+				+0.3
5,436,384	+				-0.1
5,436,384	+				-0.1
5,436,384	+				-0.8
5,436,385	-				-1.3
5,436,385	-				-1.0
5,436,385	-				+0.6
5,436,385	-				+0.4
5,436,493	+		PFR28_04774	0.16	-0.6
5,436,494	-		PFR28_04774	0.16	-0.0
5,436,631	+		PFR28_04774	0.29	+0.2
5,436,632	-		PFR28_04774	0.30	-1.2
5,436,790	-		PFR28_04774	0.46	+0.1
5,436,874	+		PFR28_04774	0.54	-1.3
5,436,874	+		PFR28_04774	0.54	+0.8
5,436,874	+		PFR28_04774	0.54	-0.4
5,436,874	+		PFR28_04774	0.54	-0.2
5,436,875	-		PFR28_04774	0.54	+1.3
5,436,875	-		PFR28_04774	0.54	-2.8
5,436,875	-		PFR28_04774	0.54	+0.4
5,436,875	-		PFR28_04774	0.54	+1.0