Experiment: Glycocyamine 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_03679 and PFR28_03680 are separated by 130 nucleotides PFR28_03680 and PFR28_03681 are separated by 132 nucleotides PFR28_03681 and PFR28_03682 overlap by 8 nucleotides PFR28_03682 and PFR28_03683 are separated by 220 nucleotides
PFR28_03679: PFR28_03679 - Carbonic anhydrase 2, at 4,243,394 to 4,244,038
_03679
PFR28_03680: PFR28_03680 - hypothetical protein, at 4,244,169 to 4,244,591
_03680
PFR28_03681: PFR28_03681 - [Ribosomal protein S18]-alanine N-acetyltransferase, at 4,244,724 to 4,245,176
_03681
PFR28_03682: PFR28_03682 - hypothetical protein, at 4,245,169 to 4,245,912
_03682
PFR28_03683: PFR28_03683 - hypothetical protein, at 4,246,133 to 4,247,410
_03683
Position (kb) 4244
4245
4246 Strain fitness (log2 ratio) -2
-1
0
1 at 4243.791 kb on + strand, within PFR28_03679 at 4243.853 kb on + strand, within PFR28_03679 at 4243.853 kb on + strand, within PFR28_03679 at 4243.854 kb on - strand, within PFR28_03679 at 4243.930 kb on - strand, within PFR28_03679 at 4244.011 kb on + strand at 4244.012 kb on - strand at 4244.012 kb on - strand at 4244.027 kb on + strand at 4244.027 kb on + strand at 4244.028 kb on - strand at 4244.058 kb on + strand at 4244.058 kb on + strand at 4244.103 kb on + strand at 4244.164 kb on + strand at 4244.165 kb on - strand at 4244.445 kb on + strand, within PFR28_03680 at 4244.445 kb on + strand, within PFR28_03680 at 4244.446 kb on - strand, within PFR28_03680 at 4244.739 kb on - strand at 4244.739 kb on - strand at 4244.739 kb on - strand at 4244.739 kb on - strand at 4244.751 kb on + strand at 4244.785 kb on + strand, within PFR28_03681 at 4244.786 kb on - strand, within PFR28_03681 at 4244.827 kb on + strand, within PFR28_03681 at 4244.828 kb on - strand, within PFR28_03681 at 4244.920 kb on - strand, within PFR28_03681 at 4244.966 kb on + strand, within PFR28_03681 at 4244.967 kb on - strand, within PFR28_03681 at 4244.967 kb on - strand, within PFR28_03681 at 4244.967 kb on - strand, within PFR28_03681 at 4245.100 kb on + strand, within PFR28_03681 at 4245.100 kb on + strand, within PFR28_03681 at 4245.100 kb on + strand, within PFR28_03681 at 4245.101 kb on - strand, within PFR28_03681 at 4245.110 kb on - strand, within PFR28_03681 at 4245.124 kb on - strand, within PFR28_03681 at 4245.124 kb on - strand, within PFR28_03681 at 4245.162 kb on + strand at 4245.163 kb on - strand at 4245.970 kb on + strand at 4245.970 kb on + strand at 4246.031 kb on + strand at 4246.031 kb on + strand at 4246.031 kb on + strand at 4246.031 kb on + strand at 4246.031 kb on + strand at 4246.031 kb on + strand at 4246.032 kb on - strand at 4246.032 kb on - strand at 4246.032 kb on - strand at 4246.032 kb on - strand at 4246.032 kb on - strand at 4246.093 kb on - strand at 4246.093 kb on - strand at 4246.107 kb on + strand at 4246.107 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycocyamine 20 mM (C) remove 4,243,791 + PFR28_03679 0.62 -1.7 4,243,853 + PFR28_03679 0.71 -0.0 4,243,853 + PFR28_03679 0.71 -1.2 4,243,854 - PFR28_03679 0.71 -0.6 4,243,930 - PFR28_03679 0.83 -1.6 4,244,011 + -0.1 4,244,012 - -0.3 4,244,012 - +0.5 4,244,027 + +0.4 4,244,027 + -0.4 4,244,028 - -1.4 4,244,058 + -1.6 4,244,058 + -1.1 4,244,103 + -0.0 4,244,164 + -0.9 4,244,165 - -0.9 4,244,445 + PFR28_03680 0.65 -0.9 4,244,445 + PFR28_03680 0.65 +0.5 4,244,446 - PFR28_03680 0.65 -0.9 4,244,739 - -1.3 4,244,739 - +0.2 4,244,739 - +0.3 4,244,739 - -1.6 4,244,751 + +1.4 4,244,785 + PFR28_03681 0.13 -1.9 4,244,786 - PFR28_03681 0.14 -1.2 4,244,827 + PFR28_03681 0.23 -0.4 4,244,828 - PFR28_03681 0.23 -0.6 4,244,920 - PFR28_03681 0.43 +1.6 4,244,966 + PFR28_03681 0.53 -1.2 4,244,967 - PFR28_03681 0.54 -1.3 4,244,967 - PFR28_03681 0.54 -0.5 4,244,967 - PFR28_03681 0.54 -0.8 4,245,100 + PFR28_03681 0.83 +0.4 4,245,100 + PFR28_03681 0.83 -1.7 4,245,100 + PFR28_03681 0.83 +0.6 4,245,101 - PFR28_03681 0.83 -1.6 4,245,110 - PFR28_03681 0.85 +0.7 4,245,124 - PFR28_03681 0.88 +0.2 4,245,124 - PFR28_03681 0.88 +0.2 4,245,162 + -0.4 4,245,163 - +0.4 4,245,970 + -1.6 4,245,970 + -2.3 4,246,031 + -0.5 4,246,031 + +1.4 4,246,031 + -0.3 4,246,031 + -1.5 4,246,031 + -0.6 4,246,031 + -0.2 4,246,032 - +0.6 4,246,032 - -1.3 4,246,032 - +0.9 4,246,032 - +0.8 4,246,032 - -0.2 4,246,093 - -0.3 4,246,093 - +0.6 4,246,107 + -0.6 4,246,107 + -0.1
Or see this region's nucleotide sequence