Strain Fitness in Pseudomonas sp. RS175 around PFR28_03403

Experiment: Glycocyamine 20 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycocyamine 20 mM (C)
3,913,090	+		PFR28_03401	0.25	+0.6
3,913,090	+		PFR28_03401	0.25	-0.8
3,913,090	+		PFR28_03401	0.25	-0.3
3,913,091	-		PFR28_03401	0.25	+1.3
3,913,199	-		PFR28_03401	0.37	+0.4
3,913,209	-		PFR28_03401	0.38	-0.4
3,913,385	+		PFR28_03401	0.56	+0.3
3,913,385	+		PFR28_03401	0.56	-2.5
3,913,385	+		PFR28_03401	0.56	-1.4
3,913,385	+		PFR28_03401	0.56	-0.1
3,913,543	+		PFR28_03401	0.72	+1.1
3,913,543	+		PFR28_03401	0.72	+0.0
3,913,544	-		PFR28_03401	0.73	+1.7
3,913,544	-		PFR28_03401	0.73	-1.9
3,913,544	-		PFR28_03401	0.73	+0.3
3,913,544	-		PFR28_03401	0.73	-1.2
3,913,546	-		PFR28_03401	0.73	-2.5
3,913,546	-		PFR28_03401	0.73	-0.7
3,913,546	-		PFR28_03401	0.73	-0.1
3,913,576	+		PFR28_03401	0.76	-1.8
3,913,576	+		PFR28_03401	0.76	-0.3
3,913,576	+		PFR28_03401	0.76	-0.2
3,913,576	+		PFR28_03401	0.76	+2.3
3,913,576	+		PFR28_03401	0.76	-0.9
3,913,576	+		PFR28_03401	0.76	+0.3
3,913,576	+		PFR28_03401	0.76	-0.5
3,913,576	+		PFR28_03401	0.76	-0.4
3,913,576	+		PFR28_03401	0.76	-0.7
3,913,576	+		PFR28_03401	0.76	+1.3
3,913,576	+		PFR28_03401	0.76	-1.1
3,913,576	+		PFR28_03401	0.76	+3.3
3,913,576	+		PFR28_03401	0.76	+1.0
3,913,576	+		PFR28_03401	0.76	+0.5
3,913,576	+		PFR28_03401	0.76	-0.8
3,913,577	-		PFR28_03401	0.76	-0.1
3,913,577	-		PFR28_03401	0.76	-0.3
3,913,577	-		PFR28_03401	0.76	+0.9
3,913,577	-		PFR28_03401	0.76	+1.3
3,913,577	-		PFR28_03401	0.76	-0.1
3,913,577	-		PFR28_03401	0.76	+0.1
3,913,577	-		PFR28_03401	0.76	+0.3
3,913,577	-		PFR28_03401	0.76	+0.3
3,913,577	-		PFR28_03401	0.76	+0.3
3,913,577	-		PFR28_03401	0.76	-0.6
3,913,577	-		PFR28_03401	0.76	-1.3
3,913,577	-		PFR28_03401	0.76	-1.3
3,913,577	-		PFR28_03401	0.76	-0.4
3,913,577	-		PFR28_03401	0.76	+2.3
3,913,577	-		PFR28_03401	0.76	+0.7
3,913,713	+				+0.4
3,913,713	+				-0.3
3,913,859	-				+0.0
3,913,925	-				+1.3
3,913,925	-				-1.4
3,913,925	-				+0.7
3,913,925	-				-1.1
3,913,939	-		PFR28_03402	0.17	+0.3
3,914,072	+				+0.1
3,914,139	+		PFR28_03403	0.11	+0.3
3,914,139	+		PFR28_03403	0.11	+1.0
3,914,139	+		PFR28_03403	0.11	-0.1
3,914,139	+		PFR28_03403	0.11	-2.2
3,914,140	-		PFR28_03403	0.11	-0.7
3,914,140	-		PFR28_03403	0.11	-1.1
3,914,172	-		PFR28_03403	0.15	-0.6
3,914,193	-		PFR28_03403	0.18	+1.3
3,914,193	-		PFR28_03403	0.18	+2.3
3,914,438	-		PFR28_03403	0.54	-1.7
3,914,438	-		PFR28_03403	0.54	-0.3
3,914,455	+		PFR28_03403	0.56	-0.3
3,914,455	+		PFR28_03403	0.56	+0.4
3,914,455	+		PFR28_03403	0.56	-1.6
3,914,456	-		PFR28_03403	0.56	-0.9
3,914,456	-		PFR28_03403	0.56	+1.3
3,914,459	+		PFR28_03403	0.57	+0.4
3,914,459	+		PFR28_03403	0.57	-0.7
3,914,459	+		PFR28_03403	0.57	-1.1
3,914,459	+		PFR28_03403	0.57	+0.9
3,914,459	+		PFR28_03403	0.57	+1.3
3,914,459	+		PFR28_03403	0.57	+0.3
3,914,459	+		PFR28_03403	0.57	+0.3
3,914,459	+		PFR28_03403	0.57	+0.3
3,914,459	+		PFR28_03403	0.57	+2.3
3,914,459	+		PFR28_03403	0.57	+2.3
3,914,459	+		PFR28_03403	0.57	-0.6
3,914,459	+		PFR28_03403	0.57	+2.3
3,914,459	+		PFR28_03403	0.57	-0.6
3,914,459	+		PFR28_03403	0.57	+0.3
3,914,460	-		PFR28_03403	0.57	-0.7
3,914,460	-		PFR28_03403	0.57	+1.3
3,914,460	-		PFR28_03403	0.57	-0.1
3,914,460	-		PFR28_03403	0.57	+0.3
3,914,460	-		PFR28_03403	0.57	-0.6
3,914,460	-		PFR28_03403	0.57	-0.7
3,914,460	-		PFR28_03403	0.57	-0.7
3,914,460	-		PFR28_03403	0.57	-0.8
3,914,460	-		PFR28_03403	0.57	-0.6
3,914,502	+		PFR28_03403	0.63	+0.7
3,914,630	+		PFR28_03403	0.82	+1.8
3,914,631	-		PFR28_03403	0.82	+0.9
3,914,646	+		PFR28_03403	0.84	-1.2
3,914,646	+		PFR28_03403	0.84	+1.0
3,914,646	+		PFR28_03403	0.84	+1.0
3,914,646	+		PFR28_03403	0.84	-0.9
3,914,647	-		PFR28_03403	0.84	+0.1
3,914,647	-		PFR28_03403	0.84	-0.9
3,914,647	-		PFR28_03403	0.84	+2.7
3,914,647	-		PFR28_03403	0.84	+1.1
3,914,647	-		PFR28_03403	0.84	-1.1
3,914,647	-		PFR28_03403	0.84	-0.8
3,914,647	-		PFR28_03403	0.84	-0.4
3,914,648	+		PFR28_03403	0.84	-1.2
3,914,648	+		PFR28_03403	0.84	+0.3
3,914,648	+		PFR28_03403	0.84	-0.4
3,914,648	+		PFR28_03403	0.84	-0.6
3,914,649	-		PFR28_03403	0.84	+2.3
3,914,649	-		PFR28_03403	0.84	+0.7
3,914,649	-		PFR28_03403	0.84	-0.3
3,914,757	+				-0.7
3,914,757	+				-0.6
3,914,787	+				+0.8
3,914,788	-				-0.1
3,914,788	-				+0.4
3,914,791	+				+0.4
3,914,791	+				-0.1
3,914,791	+				+1.8
3,914,792	-				+0.4
3,914,792	-				-1.4
3,914,792	-				+0.7
3,914,792	-				+1.3
3,914,792	-				+1.4
3,914,792	-				-0.6
3,914,825	-		PFR28_03404	0.10	+0.3
3,914,835	-		PFR28_03404	0.12	+1.3
3,914,888	+		PFR28_03404	0.20	-0.4
3,914,888	+		PFR28_03404	0.20	-1.4
3,914,889	-		PFR28_03404	0.20	-0.6
3,914,889	-		PFR28_03404	0.20	+0.8
3,914,889	-		PFR28_03404	0.20	-0.4
3,915,204	+		PFR28_03404	0.69	-0.6
3,915,204	+		PFR28_03404	0.69	+0.9
3,915,205	-		PFR28_03404	0.69	+0.8
3,915,277	-		PFR28_03404	0.80	-0.7
3,915,292	-		PFR28_03404	0.82	-0.1
3,915,329	+		PFR28_03404	0.88	-0.9
3,915,329	+		PFR28_03404	0.88	+0.7
3,915,329	+		PFR28_03404	0.88	+2.3
3,915,330	-		PFR28_03404	0.88	-0.7
3,915,406	+				-0.3
3,915,407	-				-0.4
3,915,421	+				+1.3
3,915,422	-				-0.4
3,915,422	-				-0.3
3,915,428	+				+0.7
3,915,429	-				+0.3
3,915,429	-				+0.9
3,915,429	-				+0.2
3,915,570	+				-1.1
3,915,570	+				-1.9
3,915,570	+				-0.8
3,915,570	+				-0.7
3,915,571	-				-1.7
3,915,571	-				+0.4
3,915,571	-				-0.3
3,915,571	-				-1.3
3,915,571	-				-0.6
3,915,571	-				+0.7
3,915,571	-				+3.8
3,915,571	-				+0.4
3,915,571	-				-0.2
3,915,699	+		PFR28_03405	0.16	-0.6
3,915,699	+		PFR28_03405	0.16	-0.1
3,915,699	+		PFR28_03405	0.16	+0.2
3,915,699	+		PFR28_03405	0.16	-1.1
3,915,699	+		PFR28_03405	0.16	+2.3
3,915,699	+		PFR28_03405	0.16	+0.1
3,915,699	+		PFR28_03405	0.16	-1.3
3,915,700	-		PFR28_03405	0.16	-1.1
3,915,700	-		PFR28_03405	0.16	+0.7
3,915,700	-		PFR28_03405	0.16	+0.1
3,915,700	-		PFR28_03405	0.16	-1.6
3,915,700	-		PFR28_03405	0.16	-0.3
3,915,700	-		PFR28_03405	0.16	+1.1
3,915,700	-		PFR28_03405	0.16	-1.4