Strain Fitness in Pseudomonas sp. RS175 around PFR28_03648

Experiment: Glycocyamine 20 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycocyamine 20 mM (C)
4,209,523	+				+0.1
4,209,523	+				+1.2
4,209,523	+				+1.1
4,209,523	+				+1.5
4,209,523	+				-0.3
4,209,524	-				-1.4
4,209,524	-				+1.5
4,209,524	-				-0.5
4,209,524	-				+0.1
4,209,524	-				+0.4
4,209,524	-				+0.3
4,209,524	-				-0.3
4,209,652	+				-1.4
4,209,653	-				-0.1
4,209,733	-		PFR28_03647	0.17	+0.4
4,210,116	+		PFR28_03647	0.58	-0.8
4,210,116	+		PFR28_03647	0.58	-1.1
4,210,117	-		PFR28_03647	0.58	+1.4
4,210,117	-		PFR28_03647	0.58	+1.9
4,210,241	-		PFR28_03647	0.71	+0.4
4,210,306	+		PFR28_03647	0.78	-1.6
4,210,306	+		PFR28_03647	0.78	-1.0
4,210,307	-		PFR28_03647	0.78	+0.5
4,210,307	-		PFR28_03647	0.78	+0.1
4,210,307	-		PFR28_03647	0.78	-0.1
4,210,307	-		PFR28_03647	0.78	-1.9
4,210,307	-		PFR28_03647	0.78	+1.6
4,210,307	-		PFR28_03647	0.78	-0.1
4,210,307	-		PFR28_03647	0.78	+0.7
4,210,307	-		PFR28_03647	0.78	-2.0
4,210,307	-		PFR28_03647	0.78	-0.5
4,210,307	-		PFR28_03647	0.78	+0.1
4,210,307	-		PFR28_03647	0.78	-0.1
4,210,314	+		PFR28_03647	0.79	-1.6
4,210,315	-		PFR28_03647	0.79	-1.2
4,210,315	-		PFR28_03647	0.79	-1.2
4,210,420	+				-1.8
4,210,421	-				+1.9
4,210,421	-				-0.7
4,210,519	+				+0.1
4,210,520	-				-0.2
4,210,520	-				-1.0
4,210,520	-				-0.4
4,210,610	+				+0.3
4,210,610	+				+0.7
4,210,610	+				-0.2
4,210,610	+				-0.2
4,210,610	+				-1.4
4,210,610	+				-0.4
4,210,611	-				-1.2
4,210,611	-				-0.6
4,210,611	-				-0.5
4,210,611	-				-1.0
4,210,614	+				-0.1
4,210,614	+				+0.5
4,210,614	+				-0.1
4,210,614	+				-0.1
4,210,614	+				-1.2
4,210,614	+				+1.2
4,210,614	+				-0.2
4,210,614	+				-0.7
4,210,614	+				+0.6
4,210,614	+				-1.1
4,210,614	+				+1.8
4,210,614	+				-1.6
4,210,615	-				+0.4
4,210,615	-				-1.1
4,210,615	-				-0.1
4,210,615	-				+0.8
4,210,615	-				+0.5
4,210,615	-				+1.4
4,210,615	-				-0.2
4,210,615	-				-1.6
4,210,731	+		PFR28_03648	0.14	-0.1
4,210,731	+		PFR28_03648	0.14	-0.4
4,210,731	+		PFR28_03648	0.14	-0.1
4,210,732	-		PFR28_03648	0.15	+0.3
4,210,732	-		PFR28_03648	0.15	-2.0
4,210,823	+		PFR28_03648	0.21	+0.1
4,210,824	-		PFR28_03648	0.21	+0.1
4,210,824	-		PFR28_03648	0.21	+0.1
4,210,824	-		PFR28_03648	0.21	-0.6
4,210,824	-		PFR28_03648	0.21	-0.9
4,210,932	+		PFR28_03648	0.28	-0.1
4,210,932	+		PFR28_03648	0.28	+0.4
4,210,932	+		PFR28_03648	0.28	-0.3
4,210,932	+		PFR28_03648	0.28	-0.6
4,210,932	+		PFR28_03648	0.28	-0.4
4,210,932	+		PFR28_03648	0.28	+0.9
4,210,932	+		PFR28_03648	0.28	+0.4
4,210,932	+		PFR28_03648	0.28	+0.5
4,210,932	+		PFR28_03648	0.28	+2.5
4,210,932	+		PFR28_03648	0.28	+0.5
4,210,932	+		PFR28_03648	0.28	+0.6
4,210,932	+		PFR28_03648	0.28	-3.8
4,210,932	+		PFR28_03648	0.28	-0.5
4,210,932	+		PFR28_03648	0.28	+1.6
4,210,932	+		PFR28_03648	0.28	+1.7
4,210,932	+		PFR28_03648	0.28	+0.4
4,210,932	+		PFR28_03648	0.28	-0.9
4,210,932	+		PFR28_03648	0.28	+0.1
4,210,933	-		PFR28_03648	0.28	+1.9
4,210,933	-		PFR28_03648	0.28	+2.5
4,210,933	-		PFR28_03648	0.28	-0.4
4,210,933	-		PFR28_03648	0.28	+0.1
4,210,933	-		PFR28_03648	0.28	-0.2
4,210,933	-		PFR28_03648	0.28	-0.8
4,210,933	-		PFR28_03648	0.28	-1.3
4,210,933	-		PFR28_03648	0.28	-0.9
4,210,933	-		PFR28_03648	0.28	-0.2
4,210,933	-		PFR28_03648	0.28	-0.9
4,210,933	-		PFR28_03648	0.28	-0.4
4,210,933	-		PFR28_03648	0.28	-0.6
4,210,952	+		PFR28_03648	0.30	+0.4
4,210,953	-		PFR28_03648	0.30	+0.1
4,210,988	+		PFR28_03648	0.32	-0.1
4,210,988	+		PFR28_03648	0.32	-0.5
4,210,989	-		PFR28_03648	0.32	-0.2
4,211,112	+		PFR28_03648	0.41	-1.1
4,211,190	-		PFR28_03648	0.46	-1.1
4,211,292	+		PFR28_03648	0.53	+0.1
4,211,292	+		PFR28_03648	0.53	-1.4
4,211,293	-		PFR28_03648	0.53	-0.5
4,211,293	-		PFR28_03648	0.53	-1.4
4,211,372	+		PFR28_03648	0.58	+1.9
4,211,372	+		PFR28_03648	0.58	-0.1
4,211,372	+		PFR28_03648	0.58	+1.1
4,211,372	+		PFR28_03648	0.58	-0.5
4,211,372	+		PFR28_03648	0.58	-1.3
4,211,372	+		PFR28_03648	0.58	-0.9
4,211,372	+		PFR28_03648	0.58	+1.2
4,211,373	-		PFR28_03648	0.58	-1.1
4,211,373	-		PFR28_03648	0.58	-0.1
4,211,373	-		PFR28_03648	0.58	+0.8
4,211,373	-		PFR28_03648	0.58	+0.2
4,211,373	-		PFR28_03648	0.58	+1.9
4,211,373	-		PFR28_03648	0.58	-0.1
4,211,373	-		PFR28_03648	0.58	-2.2
4,211,374	+		PFR28_03648	0.58	-0.7
4,211,374	+		PFR28_03648	0.58	-1.0
4,211,375	-		PFR28_03648	0.59	+0.9
4,211,375	-		PFR28_03648	0.59	-1.4
4,211,375	-		PFR28_03648	0.59	-0.4
4,211,375	-		PFR28_03648	0.59	+0.2
4,211,375	-		PFR28_03648	0.59	+1.8
4,211,375	-		PFR28_03648	0.59	-2.3
4,211,551	+		PFR28_03648	0.71	-0.6
4,211,837	+				-0.0
4,211,837	+				+0.4
4,211,838	-				-2.1
4,211,838	-				+0.5
4,212,019	+				+0.9
4,212,020	-				-0.4
4,212,021	+				-1.0
4,212,021	+				-0.2
4,212,021	+				-0.6
4,212,021	+				-0.7
4,212,021	+				-1.0
4,212,021	+				-0.8
4,212,022	-				+0.3
4,212,022	-				+1.9
4,212,022	-				-0.2
4,212,022	-				-0.1
4,212,027	+				-0.1
4,212,028	-				-0.2
4,212,034	+				-0.1
4,212,034	+				-1.0
4,212,035	-				-1.3
4,212,035	-				+2.3
4,212,061	+				+0.4
4,212,061	+				+1.4
4,212,061	+				-0.2
4,212,061	+				-0.1
4,212,061	+				-0.1
4,212,062	-				+1.9
4,212,062	-				-0.6
4,212,062	-				+1.4
4,212,062	-				+0.1
4,212,259	+		PFR28_03649	0.21	-0.6
4,212,259	+		PFR28_03649	0.21	-0.7
4,212,259	+		PFR28_03649	0.21	-0.6
4,212,259	+		PFR28_03649	0.21	+0.1
4,212,259	+		PFR28_03649	0.21	-0.1
4,212,259	+		PFR28_03649	0.21	-2.0
4,212,260	-		PFR28_03649	0.21	-0.1
4,212,260	-		PFR28_03649	0.21	-0.9
4,212,298	+		PFR28_03649	0.26	-1.6
4,212,525	+		PFR28_03649	0.55	+0.8
4,212,525	+		PFR28_03649	0.55	+0.5
4,212,525	+		PFR28_03649	0.55	-0.4
4,212,526	-		PFR28_03649	0.55	-0.4
4,212,526	-		PFR28_03649	0.55	-1.5
4,212,526	-		PFR28_03649	0.55	-0.4
4,212,711	+		PFR28_03649	0.79	-0.5
4,212,711	+		PFR28_03649	0.79	+0.6
4,212,711	+		PFR28_03649	0.79	+0.0
4,212,711	+		PFR28_03649	0.79	-2.1
4,212,712	-		PFR28_03649	0.80	-1.1
4,212,712	-		PFR28_03649	0.80	+0.7
4,212,712	-		PFR28_03649	0.80	-0.7
4,212,712	-		PFR28_03649	0.80	-0.2
4,212,712	-		PFR28_03649	0.80	+1.9
4,212,712	-		PFR28_03649	0.80	+0.9
4,212,712	-		PFR28_03649	0.80	-1.1
4,212,712	-		PFR28_03649	0.80	+0.4
4,212,728	-		PFR28_03649	0.82	-0.6
4,212,885	+				-0.9
4,212,885	+				+0.4
4,212,885	+				-1.5
4,212,886	-				+0.1
4,212,886	-				+1.2
4,212,886	-				-2.3
4,212,886	-				-2.3
4,212,918	-				+0.5